GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

A genome-wide association identified the common genetic variants influence disease severity in beta0-thalassemia/hemoglobin E.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
ba1l HBD ENSDARG00000089087 None Not determined 2
ba1l HBG2 ENSDARG00000089087 None Not determined 1
ba1l HBG1 ENSDARG00000089087 None Not determined 2
ba1l HBE1 ENSDARG00000089087 None Not determined 2
bcl11a BCL11A ENSDARG00000061352 3 Normal 10
cmyb MYB ENSDARG00000053666 2 Not determined 12
hbbe1.1 HBG2 ENSDARG00000089963 None Not determined 1
hbbe1.1 HBG1 ENSDARG00000089963 None Not determined 2
hbbe1.1 HBE1 ENSDARG00000089963 None Not determined 2
hbbe1.1 HBD ENSDARG00000089963 None Not determined 2
hbbe2 HBE1 ENSDARG00000045143 None Not determined 2
hbbe2 HBD ENSDARG00000045143 None Not determined 2
hbbe2 HBG2 ENSDARG00000045143 None Not determined 1
hbbe2 HBG1 ENSDARG00000045143 None Not determined 2
hbbe3 HBG1 ENSDARG00000038147 None Not determined 2
hbbe3 HBE1 ENSDARG00000038147 None Not determined 2
hbbe3 HBD ENSDARG00000038147 None Not determined 2
hbbe3 HBG2 ENSDARG00000038147 None Not determined 1
hbs1l HBS1L ENSDARG00000036778 1 Not determined 11
si:busm1-118j2.5 HBG2 ENSDARG00000087390 None Not determined 1
si:busm1-118j2.5 HBG1 ENSDARG00000087390 None Not determined 2
si:busm1-118j2.5 HBE1 ENSDARG00000087390 None Not determined 2
si:busm1-118j2.5 HBD ENSDARG00000087390 None Not determined 2
si:busm1-118j2.5 HBE1 ENSDARG00000090689 1 Not determined 2
si:busm1-118j2.5 HBD ENSDARG00000090689 1 Not determined 2
si:busm1-118j2.5 HBG2 ENSDARG00000090689 1 Not determined 1
si:busm1-118j2.5 HBG1 ENSDARG00000090689 1 Not determined 2
si:ch211-127m10.2 BCL11A ENSDARG00000063153 3 Not determined 10
zgc:92880 HBG1 ENSDARG00000069734 None Not determined 2
zgc:92880 HBE1 ENSDARG00000069734 None Not determined 2
zgc:92880 HBD ENSDARG00000069734 None Not determined 2
zgc:92880 HBG2 ENSDARG00000069734 None Not determined 1

The following reported genes could not be linked automatically to a zebrafish gene:

  • HBBP1
Short-link