GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Whole genome association study of brain-wide imaging phenotypes for identifying quantitative trait loci in MCI and AD: A study of the ADNI cohort.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
apoeb APOE ENSDARG00000040295 1 Not determined 42
ek1 EPHA4 ENSDARG00000020080 7 Not determined 1
epha4a EPHA4 ENSDARG00000054454 8 Not determined 1
epha4b EPHA4 ENSDARG00000011600 2 Not determined 1
epha4l EPHA4 ENSDARG00000010767 4 Not determined 1
nxph1 NXPH1 ENSDARG00000033447 None Not determined 5
tomm40 TOMM40 ENSDARG00000092112 1 Not determined 23
tomm40l TOMM40 ENSDARG00000036721 None Not determined 23
tp63 TP63 ENSDARG00000044356 4 Normal 9
ube2d1 UBE2D1 ENSDARG00000038576 None Not determined 2
zgc:110064 APOE ENSDARG00000086370 1 Not determined 42
zgc:66323 UBE2D1 ENSDARG00000029107 None Not determined 2

The following reported genes could not be linked automatically to a zebrafish gene:

  • LOC199897
  • LOC391642
  • LOC642487
  • LOC643308
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