GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association study of PR interval.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
A5PLI8_DANRE C5orf41 ENSDARG00000078581 1 Not determined 1
cav1 CAV1 ENSDARG00000052004 None Not determined 5
cav2 CAV2 ENSDARG00000052000 2 Not determined 2
LOC100334188 TBX3 ENSDARG00000061509 None Not determined 8
meis1 MEIS1 ENSDARG00000012078 3 1 phenotype 4
meis3 MEIS1 ENSDARG00000002795 None Not determined 4
meis4.1a MEIS1 ENSDARG00000002937 4 Not determined 4
nkx2.5 NKX2-5 ENSDARG00000018004 None Not determined 2
NP_001038387.1 SCN5A ENSDARG00000059692 6 Not determined 9
NP_001038387.1 SCN10A ENSDARG00000059692 6 Not determined 8
si:ch211-247j9.1 ARHGAP24 ENSDARG00000079283 1 Not determined 4
si:ch211-65i12.2 ARHGAP24 ENSDARG00000060175 5 Not determined 4
sox5 SOX5 ENSDARG00000011582 3 Not determined 6
tbx16 TBX3 ENSDARG00000007329 None Not determined 8
tbx3 TBX3 ENSDARG00000002216 5 Normal 8
tbx5a TBX5 ENSDARG00000024894 None Not determined 10
tbx5b TBX5 ENSDARG00000092060 None Not determined 10
tbx6 TBX3 ENSDARG00000006939 1 Not determined 8
wnt11 WNT11 ENSDARG00000004256 None Not determined 1
wnt11r WNT11 ENSDARG00000014796 2 Not determined 1
zgc:158296 CAV2 ENSDARG00000070923 1 Not determined 2
zgc:172270 CAV2 ENSDARG00000003632 None Not determined 2

The following reported genes could not be linked automatically to a zebrafish gene:

  • C12orf67
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