GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Common genetic variation and the control of HIV-1 in humans.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
BTNL2 BTNL2 ENSDARG00000093039 1 Not determined 18
DDR1 DDR1 ENSDARG00000078523 None Not determined 1
hcrtr2 HCRTR2 ENSDARG00000023722 1 Normal 1
tnxb TNXB ENSDARG00000001760 5 Not determined 4
vars2 VARS2 ENSDARG00000056717 5 Not determined 2
znrd1 ZNRD1 ENSDARG00000036070 None Not determined 2

The following reported genes could not be linked automatically to a zebrafish gene:

  • C6orf12
  • CDSN
  • DPCR1
  • HCP5
  • HCP5
  • HLA-A
  • HLA-B
  • HLA-B
  • HLA-C
  • HLA-C
  • NOTCH4
  • RNF39
  • SNORD52
  • TRIM10
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