GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Common variants at five new loci associated with early-onset inflammatory bowel disease.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
ccdc101 CCDC101 ENSDARG00000002339 1 Not determined 1
eif3c EIF3C ENSDARG00000016443 None Not determined 3
LOC100332780 ZMIZ1 ENSDARG00000076477 3 Not determined 10
LOC100333801 MTMR3 ENSDARG00000089046 4 Not determined 6
nupr1 NUPR1 ENSDARG00000094557 None Not determined 2
si:ch211-196g2.5 SULT1A1 ENSDARG00000094996 1 Not determined 2
si:ch211-196g2.5 SULT1A2 ENSDARG00000094996 1 Not determined 3
si:ch211-196g2.6 SULT1A1 ENSDARG00000079079 1 Not determined 2
si:ch211-196g2.6 SULT1A2 ENSDARG00000079079 1 Not determined 3
si:ch73-100n10.1 MTMR3 ENSDARG00000093364 2 Not determined 6
sult1st1 SULT1A1 ENSDARG00000028275 1 Not determined 2
sult1st1 SULT1A2 ENSDARG00000028275 1 Not determined 3
sult1st2 SULT1A1 ENSDARG00000041540 2 Not determined 2
sult1st2 SULT1A2 ENSDARG00000041540 2 Not determined 3
sult1st3 SULT1A1 ENSDARG00000018361 1 1 phenotype 2
sult1st3 SULT1A2 ENSDARG00000018361 1 1 phenotype 3
sult1st4 SULT1A1 ENSDARG00000003181 2 Not determined 2
sult1st4 SULT1A2 ENSDARG00000003181 2 Not determined 3
sult1st5 SULT1A1 ENSDARG00000003475 1 Not determined 2
sult1st5 SULT1A2 ENSDARG00000003475 1 Not determined 3
sult1st6 SULT1A1 ENSDARG00000006811 1 Not determined 2
sult1st6 SULT1A2 ENSDARG00000006811 1 Not determined 3
zgc:77875 MTMR3 ENSDARG00000058305 2 Not determined 6
zgc:92244 CLN3 ENSDARG00000037865 1 Not determined 1
zmiz1 ZMIZ1 ENSDARG00000074502 10 Not determined 10

The following reported genes could not be linked automatically to a zebrafish gene:

  • HORMAD2
  • IL27
  • LIF
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