GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Identification of 15 loci influencing height in a Korean population.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
acpl2 ACPL2 ENSDARG00000040644 None Not determined 2
cyt1 KRT23 ENSDARG00000092947 3 Not determined 1
cyt1 KRT20 ENSDARG00000092947 3 Not determined 1
cyt1l KRT23 ENSDARG00000036832 None Not determined 1
cyt1l KRT20 ENSDARG00000036832 None Not determined 1
EXT1 (1 of 3) EXT1 ENSDARG00000089168 None Not determined 2
ext1a EXT1 ENSDARG00000093242 None Not determined 2
EXT1A_DANRE EXT1 ENSDARG00000020373 6 Not determined 2
fbp1a FBP2 ENSDARG00000021366 1 Not determined 1
fbp1b FBP2 ENSDARG00000020364 1 Not determined 1
fbp2 FBP2 ENSDARG00000012366 None Not determined 1
frem1a FREM1 ENSDARG00000069473 8 Normal 1
frem1b FREM1 ENSDARG00000062402 6 Not determined 1
hmga1 HMGA1 ENSDARG00000028335 2 Not determined 9
igf1 IGF1 ENSDARG00000094132 None Not determined 5
krt1-19d KRT23 ENSDARG00000023082 3 Not determined 1
krt1-19d KRT20 ENSDARG00000023082 3 Not determined 1
krt15 KRT23 ENSDARG00000036840 3 Not determined 1
krt15 KRT20 ENSDARG00000036840 3 Not determined 1
LOC100002543 PALM2-AKAP2 ENSDARG00000069608 8 Not determined 1
LOC100332567 EFEMP1 ENSDARG00000059121 None Not determined 8
LOC556118 KRT20 ENSDARG00000022334 7 Not determined 1
LOC556118 KRT23 ENSDARG00000022334 7 Not determined 1
LOC562072 LTBP1 ENSDARG00000056922 7 Not determined 4
nudt3a NUDT3 ENSDARG00000016256 2 Normal 2
nudt3b NUDT3 ENSDARG00000042123 None Not determined 2
nup37 NUP37 ENSDARG00000094191 1 Not determined 1
plag1 PLAG1 ENSDARG00000051926 1 Not determined 5
si:ch211-243g18.2 KRT20 ENSDARG00000044261 2 Not determined 1
si:ch211-243g18.2 KRT23 ENSDARG00000044261 2 Not determined 1
si:ch73-160p19.2 ZBTB38 ENSDARG00000077426 1 Not determined 12
si:dkey-250m6.8 EFEMP1 ENSDARG00000070996 None Not determined 8
si:dkeyp-113d7.4 KRT20 ENSDARG00000090268 None Not determined 1
si:dkeyp-113d7.4 KRT23 ENSDARG00000090268 None Not determined 1
si:dkeyp-113d7.7 KRT23 ENSDARG00000094041 4 Not determined 1
si:dkeyp-113d7.7 KRT20 ENSDARG00000094041 4 Not determined 1
si:rp71-1n18.1 KRT23 ENSDARG00000095147 None Not determined 1
si:rp71-1n18.1 KRT20 ENSDARG00000095147 None Not determined 1
supt3h SUPT3H ENSDARG00000002776 3 Not determined 7
tbx16 TBX2 ENSDARG00000007329 None Not determined 5
tbx2a TBX2 ENSDARG00000018025 1 Not determined 5
tbx2b TBX2 ENSDARG00000006120 None Not determined 5
tbx4 TBX4 ENSDARG00000030058 None Not determined 2
tbx6 TBX2 ENSDARG00000006939 1 Not determined 5
zgc:109868 KRT23 ENSDARG00000036834 4 Not determined 1
zgc:109868 KRT20 ENSDARG00000036834 4 Not determined 1
zgc:110712 KRT23 ENSDARG00000019365 1 Not determined 1
zgc:110712 KRT20 ENSDARG00000019365 1 Not determined 1
zgc:136263 C12orf48 ENSDARG00000029944 1 Not determined 1
zgc:136902 KRT23 ENSDARG00000044976 3 Not determined 1
zgc:136902 KRT20 ENSDARG00000044976 3 Not determined 1
zgc:153629 KRT23 ENSDARG00000044975 1 Not determined 1
zgc:153629 KRT20 ENSDARG00000044975 1 Not determined 1
zgc:153753 KRT23 ENSDARG00000026979 1 Not determined 1
zgc:153753 KRT20 ENSDARG00000026979 1 Not determined 1
zgc:153948 HMGA1 ENSDARG00000070951 2 Not determined 9
zgc:158252 PALM2-AKAP2 ENSDARG00000071215 None Not determined 1
zgc:171226 KRT23 ENSDARG00000044973 2 Not determined 1
zgc:171226 KRT20 ENSDARG00000044973 2 Not determined 1
zgc:92035 KRT20 ENSDARG00000014356 None Not determined 1
zgc:92035 KRT23 ENSDARG00000014356 None Not determined 1
zgc:92061 KRT23 ENSDARG00000000212 3 Not determined 1
zgc:92061 KRT20 ENSDARG00000000212 3 Not determined 1
zgc:92533 KRT20 ENSDARG00000036830 4 Not determined 1
zgc:92533 KRT23 ENSDARG00000036830 4 Not determined 1

The following reported genes could not be linked automatically to a zebrafish gene:

  • ANKRD60
  • C17orf82
  • C6orf1
  • PMCH
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