GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
bcl11a BCL11A ENSDARG00000061352 3 Normal 10
bysl BYSL ENSDARG00000001057 None Not determined 3
cd164 CD164 ENSDARG00000013628 None Not determined 3
churc1 FNTB ENSDARG00000010831 1 Not determined 2
cited2 CITED2 ENSDARG00000030905 None Not determined 5
cmyb MYB ENSDARG00000053666 2 Not determined 12
epo EPO ENSDARG00000055163 1 Not determined 2
gcdh GCDH ENSDARG00000037057 2 Not determined 1
gcdhl GCDH ENSDARG00000038361 None Not determined 1
hbs1l HBS1L ENSDARG00000036778 1 Not determined 11
hk1 HK1 ENSDARG00000039452 3 Not determined 4
ikzf1 IKZF1 ENSDARG00000013539 4 Not determined 10
kita KIT ENSDARG00000043317 5 1 phenotype 3
kitb KIT ENSDARG00000056133 3 Not determined 3
LOC100332862 TSHZ2 ENSDARG00000079201 2 Not determined 1
march1 MARCH8 ENSDARG00000037487 1 Not determined 2
mhc1uba HFE ENSDARG00000075963 None Not determined 20
mhc1ze HFE ENSDARG00000074765 None Not determined 20
mhc1zel HFE ENSDARG00000092162 1 Not determined 20
NP_001009918.2 TFRC ENSDARG00000012552 None Not determined 3
NP_919406.1 HFE ENSDARG00000086877 1 Not determined 20
prkag2 PRKAG2 ENSDARG00000001933 1 Not determined 5
prkcea PRKCE ENSDARG00000003008 None Not determined 3
prkceb PRKCE ENSDARG00000069928 4 Not determined 3
Q8MHB3_DANRE HFE ENSDARG00000076734 None Not determined 20
Q8MHB6_DANRE HFE ENSDARG00000088022 1 Not determined 20
rcl1 RCL1 ENSDARG00000038312 None Not determined 4
SH2B3 (1 of 2) SH2B3 ENSDARG00000069958 None Not determined 19
si:ch211-127m10.2 BCL11A ENSDARG00000063153 3 Not determined 10
si:ch211-231a1.5 TMPRSS6 ENSDARG00000094087 None Not determined 14
si:ch211-287j19.6 HFE ENSDARG00000001470 2 Not determined 20
si:ch73-213j4.4 HFE ENSDARG00000092731 None Not determined 20
si:dkey-161j23.8 ITFG3 ENSDARG00000071449 1 Not determined 2
si:dkey-165i4.1 ATXN2 ENSDARG00000052897 5 Normal 10
si:dkeyp-1e8.2 SH2B3 ENSDARG00000093095 None Not determined 19
tfr1a TFRC ENSDARG00000058784 1 Not determined 3
tfr1b TFRC ENSDARG00000077372 None Not determined 3
TFR2 (2 of 2) TFR2 ENSDARG00000018406 2 Not determined 4
TFR2 (1 of 2) TFR2 ENSDARG00000089980 None Not determined 4
zgc:103502 CCND3 ENSDARG00000027391 None Not determined 6
zgc:136614 HFE ENSDARG00000069471 None Not determined 20
zgc:153329 PRKAG2 ENSDARG00000012625 None Not determined 5
zgc:162228 TRAFD1 ENSDARG00000075123 None Not determined 2
zgc:171495 MARCH8 ENSDARG00000062489 None Not determined 2
zgc:64115 HFE ENSDARG00000036588 4 Not determined 20

The following reported genes could not be linked automatically to a zebrafish gene:

  • ECGF1
  • RTBDN
  • SLC17A3
Short-link