GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
EHBP1 EHBP1 ENSDARG00000043643 7 Not determined 3
igf2a IGF2 ENSDARG00000018643 None Not determined 1
igf2b IGF2 ENSDARG00000033307 1 Not determined 1
igf3 IGF2 ENSDARG00000058058 None Not determined 1
im:6912374 ITGA6 ENSDARG00000056018 1 Not determined 2
ins INS ENSDARG00000035350 None Not determined 5
insb INS ENSDARG00000034610 None Not determined 5
itga3a ITGA6 ENSDARG00000037917 4 Not determined 2
itga3b ITGA6 ENSDARG00000012824 3 Not determined 2
itga6a ITGA6 ENSDARG00000042282 2 Not determined 2
itga6b ITGA6 ENSDARG00000069946 3 Not determined 2
pdlim5 PDLIM5 ENSDARG00000038267 3 Not determined 2
th TH ENSDARG00000030621 2 Not determined 1
zgc:113068 THADA ENSDARG00000053082 2 Not determined 10
zgc:56116 PDLIM5 ENSDARG00000027600 2 Not determined 2

The following reported genes could not be linked automatically to a zebrafish gene:

  • IGF2AS
  • NKX3.1
  • TET2
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