GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
acpl2 ACPL2 ENSDARG00000040644 None Not determined 2
api5 API5 ENSDARG00000033597 1 Not determined 1
btbd11a BTBD11 ENSDARG00000063255 3 Normal 1
btbd11b BTBD11 ENSDARG00000063040 8 Not determined 1
capn5a CAPN5 ENSDARG00000069717 None Not determined 1
capn5b CAPN5 ENSDARG00000069748 1 Not determined 1
coro2ba CORO2B ENSDARG00000079440 3 Not determined 1
coro2bb CORO2B ENSDARG00000063604 None Not determined 1
cpvl CPVL ENSDARG00000056480 1 Not determined 2
dnajc15 DNAJC15 ENSDARG00000038309 1 Not determined 1
dsel DSEL ENSDARG00000061461 1 Not determined 2
ehhadh EHHADH ENSDARG00000070029 2 Normal 2
fam131c FAM131C ENSDARG00000037320 1 Not determined 1
FAM177B FAM177B ENSDARG00000086748 None Not determined 1
fam91a1 FAM91A1 ENSDARG00000003320 1 Not determined 2
FAT4 FAT4 ENSDARG00000045665 6 Normal 2
flt1 FLT1 ENSDARG00000019371 8 Normal 2
GABRB3 GABRB3 ENSDARG00000023771 3 Not determined 2
gorasp2 GORASP2 ENSDARG00000015126 1 Not determined 1
GRIN2B (2 of 2) GRIN2B ENSDARG00000079348 3 Not determined 6
grin2bb GRIN2B ENSDARG00000030376 4 Not determined 6
hccs HCCS ENSDARG00000003051 None Not determined 1
hccsa HCCS ENSDARG00000028131 1 Not determined 1
hccsal HCCS ENSDARG00000095776 1 Not determined 1
immp2l IMMP2L ENSDARG00000004925 1 Not determined 1
jam2a JAM2 ENSDARG00000058996 2 Not determined 1
jam2b JAM2 ENSDARG00000079071 1 Not determined 1
jun JUN ENSDARG00000043531 None Not determined 1
lmo2 LMO2 ENSDARG00000091986 None Not determined 1
LOC100329307 DSEL ENSDARG00000074504 1 Not determined 2
LOC556807 FAT4 ENSDARG00000078088 12 Not determined 2
LOC566344 FBXO40 ENSDARG00000091119 None Not determined 2
LOC571043 SLC24A2 ENSDARG00000063158 1 Not determined 1
mdm4 MDM4 ENSDARG00000057513 5 Normal 1
mthfd1 MTHFD1 ENSDARG00000040492 1 Not determined 1
ncor2 NCOR2 ENSDARG00000000966 16 Normal 1
nrip1a NRIP1 ENSDARG00000068965 6 Not determined 1
nrip1b NRIP1 ENSDARG00000068894 2 Not determined 1
PLCB1 (2 of 2) PLCB1 ENSDARG00000068594 2 Not determined 4
PLCB1 (1 of 2) PLCB1 ENSDARG00000090084 None Not determined 4
Q32PT0_DANRE UNC13C ENSDARG00000053220 8 Not determined 2
RBTN2_DANRE LMO2 ENSDARG00000095019 None Not determined 1
sec14l1 SEC14L1 ENSDARG00000019301 1 Not determined 1
SEC14L1 (1 of 2) SEC14L1 ENSDARG00000086013 None Not determined 1
sh3gl2 SH3GL2 ENSDARG00000023600 2 Not determined 5
SH3GL2 (1 of 2) SH3GL2 ENSDARG00000039901 None Not determined 5
si:ch211-146l10.2 VPS41 ENSDARG00000063573 6 Not determined 1
si:ch211-160d20.1 CAPN5 ENSDARG00000010758 2 Not determined 1
si:ch211-214j24.7 C6orf129 ENSDARG00000045850 None Not determined 1
si:ch73-85k9.1 TSHZ3 ENSDARG00000087394 3 Not determined 2
si:dkey-1h6.1 MTHFD1 ENSDARG00000018266 7 Normal 1
si:dkey-22o22.2 FAT4 ENSDARG00000079247 8 Not determined 2
tox TOX ENSDARG00000032317 2 Not determined 3
TSHZ3 (1 of 2) TSHZ3 ENSDARG00000015959 4 Not determined 2
uchl1 UCHL1 ENSDARG00000026871 1 Not determined 1
unc13c UNC13C ENSDARG00000069731 None Not determined 2
UNC13C (3 of 4) UNC13C ENSDARG00000087946 1 Not determined 2
UNC13C (1 of 4) UNC13C ENSDARG00000087669 None Not determined 2
vangl2 VANGL2 ENSDARG00000027397 2 Not determined 1
zgc:110091 C11orf73 ENSDARG00000040546 None Not determined 1
zgc:153443 SLC24A2 ENSDARG00000042988 1 Not determined 1
zgc:153924 JUN ENSDARG00000028415 None Not determined 1
zgc:172158 FBXO40 ENSDARG00000069775 3 Not determined 2

The following reported genes could not be linked automatically to a zebrafish gene:

  • AC007402.3
  • AC007953.21
  • AC009117.8
  • AC090059.9
  • AC091951.3
  • AC092725.3
  • AC103702.3
  • AC108171.5
  • AL353597.20
  • AL354896.16
  • AL445923.10
  • ARPP-21
  • C18orf4
  • CCDC64
  • GRIP2
  • KLHL1
  • MOBP
  • RIT2
  • RP11-120J20.1
  • VCX3B
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