GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Common variants on chromosome 6p22.1 are associated with schizophrenia.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
BTNL2 BTN3A1 ENSDARG00000093039 1 Not determined 1
BTNL2 BTN2A2 ENSDARG00000093039 1 Not determined 1
BTNL2 BTN3A2 ENSDARG00000093039 1 Not determined 1
pom121 POM121L2 ENSDARG00000055113 2 Not determined 2
si:busm1-160c18.1 HLA-DQA1 ENSDARG00000053739 2 Not determined 27
si:busm1-194e12.11 HLA-DQA1 ENSDARG00000055441 1 Not determined 27
si:busm1-228j01.3 HLA-DQA1 ENSDARG00000086294 2 Not determined 27
si:busm1-228j01.5 HLA-DQA1 ENSDARG00000079593 3 Not determined 27
si:ch1073-403i13.1 HLA-DQA1 ENSDARG00000001832 None Not determined 27
si:ch73-211l2.3 HLA-DQA1 ENSDARG00000075932 1 Not determined 27
si:dkeyp-2h4.2 HLA-DQA1 ENSDARG00000031745 None Not determined 27
si:zfos-2070c2.1 HLA-DQA1 ENSDARG00000070206 None Not determined 27
si:zfos-367g9.1 HLA-DQA1 ENSDARG00000074816 1 Not determined 27
zgc:123107 HLA-DQA1 ENSDARG00000020286 None Not determined 27
zgc:158605 PRSS16 ENSDARG00000076602 2 Not determined 2

The following reported genes could not be linked automatically to a zebrafish gene:

  • HIST1H2AG
  • HIST1H2BJ
  • SLC17A1
  • SLC17A3
  • ZNF184
Short-link