GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
atp2b1a ATP2B1 ENSDARG00000012684 2 Not determined 6
atp2b1b ATP2B1 ENSDARG00000007788 7 Not determined 6
C12orf51 (3 of 3) C12orf51 ENSDARG00000090715 None Not determined 9
C12orf51 (1 of 3) C12orf51 ENSDARG00000079151 5 Not determined 9
fam3c FAM3C ENSDARG00000056152 None Not determined 1
fto FTO ENSDARG00000044216 3 Not determined 32
hmga1 HMGA1 ENSDARG00000028335 2 Not determined 9
LOC100330423 C12orf51 ENSDARG00000003682 4 Not determined 9
LOC100332567 EFEMP1 ENSDARG00000059121 None Not determined 8
plag1 PLAG1 ENSDARG00000051926 1 Not determined 5
si:ch73-160p19.2 ZBTB38 ENSDARG00000077426 1 Not determined 12
si:dkey-250m6.8 EFEMP1 ENSDARG00000070996 None Not determined 8
si:dkey-78k11.2 CD46 ENSDARG00000095512 None Not determined 3
zgc:101783 FAM3C ENSDARG00000045824 4 Not determined 1
zgc:110775 CD46 ENSDARG00000056075 1 Not determined 3
zgc:153948 HMGA1 ENSDARG00000070951 2 Not determined 9

The following reported genes could not be linked automatically to a zebrafish gene:

  • LOC148696
  • LOC644502
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