GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Common variants at ten loci modulate the QT interval duration in the QTSCD Study.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
atp1b1a ATP1B1 ENSDARG00000013144 1 Not determined 2
atp1b1b ATP1B1 ENSDARG00000076833 None Not determined 2
F100A_DANRE LITAF ENSDARG00000076069 None Not determined 4
kcnh2 KCNH2 ENSDARG00000029881 7 Not determined 5
kcnq1 KCNQ1 ENSDARG00000059798 4 Not determined 15
KCNQ1 KCNQ1 ENSDARG00000091599 None Not determined 15
litaf LITAF ENSDARG00000052666 None Not determined 4
LOC100001767 RNF207 ENSDARG00000091126 1 Not determined 2
LOC100150282 KCNH2 ENSDARG00000060053 None Not determined 5
LOC564522 KCNJ2 ENSDARG00000019418 None Not determined 9
ndrg4 NDRG4 ENSDARG00000062236 1 Not determined 4
nos1apa NOS1AP ENSDARG00000078725 None Not determined 10
NP_001038387.1 SCN5A ENSDARG00000059692 6 Not determined 9
rnf207 RNF207 ENSDARG00000012409 3 Not determined 2
si:ch211-8c17.5 KCNJ2 ENSDARG00000038373 1 Not determined 9
si:dkey-34e4.1 NOS1AP ENSDARG00000022085 1 Not determined 10
si:dkeyp-75b4.8 LITAF ENSDARG00000077542 None Not determined 4
wu:fb12c06 LITAF ENSDARG00000087093 None Not determined 4

The following reported genes could not be linked automatically to a zebrafish gene:

  • PLN
  • PLN
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