GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Common variants at ten loci influence QT interval duration in the QTGEN Study.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
acot7 ACOT7 ENSDARG00000018653 None Not determined 1
cnot1 CNOT1 ENSDARG00000004174 3 Not determined 2
F100A_DANRE LITAF ENSDARG00000076069 None Not determined 4
gins3 GINS3 ENSDARG00000038847 None Not determined 1
got2a GOT2 ENSDARG00000041068 None Not determined 2
got2b GOT2 ENSDARG00000005840 None Not determined 2
kcnh2 KCNH2 ENSDARG00000029881 7 Not determined 5
kcnq1 KCNQ1 ENSDARG00000059798 4 Not determined 15
KCNQ1 KCNQ1 ENSDARG00000091599 None Not determined 15
litaf LITAF ENSDARG00000052666 None Not determined 4
LOC100001767 RNF207 ENSDARG00000091126 1 Not determined 2
LOC100150282 KCNH2 ENSDARG00000060053 None Not determined 5
LOC796404 PLEKHG5 ENSDARG00000089038 4 Not determined 1
ndrg4 NDRG4 ENSDARG00000062236 1 Not determined 4
nos1apa NOS1AP ENSDARG00000078725 None Not determined 10
NP_001038387.1 SCN5A ENSDARG00000059692 6 Not determined 9
plekhg5 PLEKHG5 ENSDARG00000025902 4 Not determined 1
rnf207 RNF207 ENSDARG00000012409 3 Not determined 2
si:dkey-202c5.1 NPHP4 ENSDARG00000069014 4 Normal 1
si:dkey-34e4.1 NOS1AP ENSDARG00000022085 1 Not determined 10
si:dkeyp-75b4.8 LITAF ENSDARG00000077542 None Not determined 4
slc35f1 SLC35F1 ENSDARG00000053003 None Not determined 6
slc38a7 SLC38A7 ENSDARG00000012002 None Not determined 1
snn SNN ENSDARG00000052667 None Not determined 1
wu:fb12c06 LITAF ENSDARG00000087093 None Not determined 4
zc3h7a ZC3H7A ENSDARG00000021047 4 Not determined 1
zgc:112973 LIG3 ENSDARG00000052553 2 Not determined 1
zgc:171740 RFFL ENSDARG00000056244 1 Not determined 1
zgc:56230 CLEC16A ENSDARG00000038094 3 Not determined 13
zgc:77828 RFFL ENSDARG00000042833 None Not determined 1

The following reported genes could not be linked automatically to a zebrafish gene:

  • ASF1A
  • c6orf204
  • CHDS
  • KLH21
  • PLN
  • TNFRSF17
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