GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association of early-onset myocardial infarction with single nucleotide polymorphisms and copy number variants.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
cdkn2b CDKN2A ENSDARG00000037262 2 Not determined 25
cdkn2b CDKN2B ENSDARG00000037262 2 Not determined 30
celsr1a CELSR2 ENSDARG00000069185 8 Not determined 17
CELSR2 CELSR2 ENSDARG00000088231 4 Not determined 17
celsr2l CELSR2 ENSDARG00000019726 2 Not determined 17
cxcl12a CXCL12 ENSDARG00000037116 2 Not determined 4
cxcl12b CXCL12 ENSDARG00000055100 4 Not determined 4
ldlr LDLR ENSDARG00000029476 3 Not determined 15
LDLR (2 of 2) LDLR ENSDARG00000089730 None Not determined 15
mia3 MIA3 ENSDARG00000008184 2 Not determined 3
PCSK9 PCSK9 ENSDARG00000074185 1 Not determined 10
Q5SP03_DANRE MIA3 ENSDARG00000095703 None Not determined 3
si:ch211-125e6.9 SLC5A3 ENSDARG00000077812 1 Not determined 1
si:ch211-132g1.5 SLC5A3 ENSDARG00000010376 2 Not determined 1
si:dkey-159a18.1 SORT1 ENSDARG00000056145 1 Not determined 13
si:dkey-258f14.3 LDLR ENSDARG00000075974 None Not determined 15
si:dkey-30k22.7 CELSR2 ENSDARG00000037286 4 Not determined 17
sort1a SORT1 ENSDARG00000029402 1 Not determined 13
sort1b SORT1 ENSDARG00000056252 10 Not determined 13
wdr12 WDR12 ENSDARG00000003287 1 Not determined 2
zgc:153390 MRPS6 ENSDARG00000039543 None Not determined 2

The following reported genes could not be linked automatically to a zebrafish gene:

  • KCNE2
  • PHACTR1
  • PSRC1
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