GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genomewide association study of an AIDS-nonprogression cohort emphasizes the role played by HLA genes (ANRS Genomewide Association Study 02).

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
bat1 BAT1 ENSDARG00000036069 None Not determined 3
mhc1uba MICB ENSDARG00000075963 None Not determined 7
mhc1ze MICB ENSDARG00000074765 None Not determined 7
mhc1zel MICB ENSDARG00000092162 1 Not determined 7
NP_919406.1 MICB ENSDARG00000086877 1 Not determined 7
Q8MHB3_DANRE MICB ENSDARG00000076734 None Not determined 7
Q8MHB6_DANRE MICB ENSDARG00000088022 1 Not determined 7
si:ch211-287j19.6 MICB ENSDARG00000001470 2 Not determined 7
si:ch73-213j4.4 MICB ENSDARG00000092731 None Not determined 7
tnfa TNF ENSDARG00000009511 3 Not determined 3
tnfb TNF ENSDARG00000013598 2 Not determined 3
zgc:136614 MICB ENSDARG00000069471 None Not determined 7
zgc:64115 MICB ENSDARG00000036588 4 Not determined 7
znrd1 ZNRD1 ENSDARG00000036070 None Not determined 2

The following reported genes could not be linked automatically to a zebrafish gene:

  • HCP5
  • HLA-C
  • LTB
  • MCCD1
  • RNF39
Short-link