GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Common variants at CD40 and other loci confer risk of rheumatoid arthritis.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
kif5a KIF5A ENSDARG00000005470 3 Not determined 1
LOC560703 MMEL1 ENSDARG00000026398 3 Not determined 6
LOC569515 CDK6 ENSDARG00000030163 2 Not determined 8
LOC799274 KIF5A ENSDARG00000059818 4 Not determined 1
mhc2dab HLA-DRB1 ENSDARG00000079105 None Not determined 35
NP_001091732.1 HLA-DRB1 ENSDARG00000071168 1 Not determined 35
olig3 OLIG3 ENSDARG00000074253 None Not determined 5
olig4 OLIG3 ENSDARG00000052610 1 Normal 5
PIP4K2C (2 of 2) PIP4K2C ENSDARG00000091637 None Not determined 1
pip5k2 PIP4K2C ENSDARG00000031020 2 Not determined 1
prkcq PRKCQ ENSDARG00000034173 3 Not determined 6
ptpn22 PTPN22 ENSDARG00000075062 5 Not determined 17
si:busm1-104n07.3 HLA-DRB1 ENSDARG00000074510 1 Normal 35
si:busm1-160c18.3 HLA-DRB1 ENSDARG00000053738 None Not determined 35
si:busm1-160c18.3 HLA-DRB1 ENSDARG00000093706 None Not determined 35
si:busm1-194e12.12 HLA-DRB1 ENSDARG00000055447 None Not determined 35
si:busm1-228j01.4 HLA-DRB1 ENSDARG00000088872 2 Not determined 35
si:busm1-228j01.6 HLA-DRB1 ENSDARG00000041705 1 Not determined 35
si:ch211-234f14.1 CDK6 ENSDARG00000070228 None Not determined 8
si:zfos-2070c2.3 HLA-DRB1 ENSDARG00000076307 None Not determined 35
wu:fd58b11 HLA-DRB1 ENSDARG00000054921 None Not determined 35
zgc:153067 HLA-DRB1 ENSDARG00000056330 2 Not determined 35

The following reported genes could not be linked automatically to a zebrafish gene:

  • CCL21
  • CD40
  • TNFIP3
  • TNFRSF14
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