(GWAS data used on the Zebrafish Mutation Project Web site comes from

Common variants at CD40 and other loci confer risk of rheumatoid arthritis.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
kif5a KIF5A ENSDARG00000005470 3 Not determined 1
LOC560703 MMEL1 ENSDARG00000026398 3 Not determined 6
LOC569515 CDK6 ENSDARG00000030163 2 Not determined 8
LOC799274 KIF5A ENSDARG00000059818 4 Not determined 1
mhc2dab HLA-DRB1 ENSDARG00000079105 None Not determined 35
NP_001091732.1 HLA-DRB1 ENSDARG00000071168 1 Not determined 35
olig3 OLIG3 ENSDARG00000074253 None Not determined 5
olig4 OLIG3 ENSDARG00000052610 1 Normal 5
PIP4K2C (2 of 2) PIP4K2C ENSDARG00000091637 None Not determined 1
pip5k2 PIP4K2C ENSDARG00000031020 2 Not determined 1
prkcq PRKCQ ENSDARG00000034173 3 Not determined 6
ptpn22 PTPN22 ENSDARG00000075062 5 Not determined 17
si:busm1-104n07.3 HLA-DRB1 ENSDARG00000074510 1 Normal 35
si:busm1-160c18.3 HLA-DRB1 ENSDARG00000053738 None Not determined 35
si:busm1-160c18.3 HLA-DRB1 ENSDARG00000093706 None Not determined 35
si:busm1-194e12.12 HLA-DRB1 ENSDARG00000055447 None Not determined 35
si:busm1-228j01.4 HLA-DRB1 ENSDARG00000088872 2 Not determined 35
si:busm1-228j01.6 HLA-DRB1 ENSDARG00000041705 1 Not determined 35
si:ch211-234f14.1 CDK6 ENSDARG00000070228 None Not determined 8
si:zfos-2070c2.3 HLA-DRB1 ENSDARG00000076307 None Not determined 35
wu:fd58b11 HLA-DRB1 ENSDARG00000054921 None Not determined 35
zgc:153067 HLA-DRB1 ENSDARG00000056330 2 Not determined 35

The following reported genes could not be linked automatically to a zebrafish gene:

  • CCL21
  • CD40
  • TNFIP3
  • TNFRSF14