GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association scan identifies candidate polymorphisms associated with differential response to anti-TNF treatment in rheumatoid arthritis.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
cst3 CST5 ENSDARG00000007795 1 Not determined 1
ifnphi2 IFNK ENSDARG00000069012 None Not determined 5
ifnphi3 IFNK ENSDARG00000070676 1 Not determined 5
lass6 LASS6 ENSDARG00000053583 1 Not determined 1
lmo4a LMO4 ENSDARG00000013853 1 Normal 2
lmo4b LMO4 ENSDARG00000054749 2 Not determined 2
mafba MAFB ENSDARG00000017121 None Not determined 5
mafbb MAFB ENSDARG00000070542 1 Not determined 5
qk QKI ENSDARG00000044462 None Not determined 1
si:ch73-47d4.1 QKI ENSDARG00000002026 2 Not determined 1
si:dkey-90l8.3 LMO4 ENSDARG00000052657 None Not determined 2
si:dkey-90l8.3 LMO4 ENSDARG00000093434 None Not determined 2
zgc:112374 PON1 ENSDARG00000040290 None Not determined 2
zgc:163030 CST5 ENSDARG00000069192 1 Not determined 1
zgc:56628 LMO4 ENSDARG00000015849 1 Not determined 2
zgc:65890 QKI ENSDARG00000010018 3 Not determined 1
zgc:77556 PON1 ENSDARG00000016856 1 Not determined 2
zgc:91887 PON1 ENSDARG00000032496 None Not determined 2

The following reported genes could not be linked automatically to a zebrafish gene:

  • CENTD1
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