GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association scan of tag SNPs identifies a susceptibility locus for lung cancer at 15q25.1.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
chrna5 CHRNA5 ENSDARG00000003420 3 Normal 13
IL1RAP IL1RAP ENSDARG00000091088 2 Not determined 2
LOC568467 CHRNA3 ENSDARG00000054497 2 Not determined 15
psma4 PSMA4 ENSDARG00000045928 None Not determined 4
si:ch211-234p6.10 CRP ENSDARG00000056498 None Not determined 13
si:ch211-234p6.12 CRP ENSDARG00000042613 None Not determined 13
si:ch211-234p6.13 CRP ENSDARG00000056462 None Not determined 13
si:ch211-234p6.14 CRP ENSDARG00000071454 2 Not determined 13
si:ch211-234p6.7 CRP ENSDARG00000071456 None Not determined 13
si:ch211-234p6.8 CRP ENSDARG00000071457 None Not determined 13
si:ch211-234p6.9 CRP ENSDARG00000095730 None Not determined 13
si:ch211-270n8.1 CRP ENSDARG00000045089 None Not determined 13
zgc:101049 CRP ENSDARG00000071051 1 Not determined 13

The following reported genes could not be linked automatically to a zebrafish gene:

  • LOC123688
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