GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
irf5 IRF5 ENSDARG00000045681 None Not determined 14
ITGAM ITGAM ENSDARG00000002956 2 Not determined 5
pxk PXK ENSDARG00000063195 2 Not determined 2
tnpo3 TNPO3 ENSDARG00000045680 4 Not determined 7

The following reported genes could not be linked automatically to a zebrafish gene:

  • HLA region
  • KIAA1542
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