GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
bltk BLK ENSDARG00000007783 2 Not determined 11
ghra GHR ENSDARG00000054771 2 Not determined 2
ghrb GHR ENSDARG00000007671 None Not determined 2
irf5 IRF5 ENSDARG00000045681 None Not determined 14
ITGAM ITGAX ENSDARG00000002956 2 Not determined 1
ITGAM ITGAM ENSDARG00000002956 2 Not determined 5
LOC558703 SOCS6 ENSDARG00000058565 None Not determined 1
negr1 NEGR1 ENSDARG00000021607 1 Not determined 6
NEGR1 (2 of 2) NEGR1 ENSDARG00000091309 None Not determined 6
ntm NEGR1 ENSDARG00000018065 1 Not determined 6
NTNG2 (2 of 2) NTNG2 ENSDARG00000087100 3 Not determined 1
si:busm1-160c18.1 HLA-DQA1 ENSDARG00000053739 2 Not determined 27
si:busm1-194e12.11 HLA-DQA1 ENSDARG00000055441 1 Not determined 27
si:busm1-228j01.3 HLA-DQA1 ENSDARG00000086294 2 Not determined 27
si:busm1-228j01.5 HLA-DQA1 ENSDARG00000079593 3 Not determined 27
si:ch1073-403i13.1 HLA-DQA1 ENSDARG00000001832 None Not determined 27
si:ch211-195h3.2 NTNG2 ENSDARG00000077367 9 Not determined 1
si:ch73-211l2.3 HLA-DQA1 ENSDARG00000075932 1 Not determined 27
si:dkeyp-2h4.2 HLA-DQA1 ENSDARG00000031745 None Not determined 27
si:zfos-2070c2.1 HLA-DQA1 ENSDARG00000070206 None Not determined 27
si:zfos-367g9.1 HLA-DQA1 ENSDARG00000074816 1 Not determined 27
socs6b SOCS6 ENSDARG00000015863 None Not determined 1
stat4 STAT4 ENSDARG00000028731 3 Not determined 19
tnpo3 TNPO3 ENSDARG00000045680 4 Not determined 7
zgc:123107 HLA-DQA1 ENSDARG00000020286 None Not determined 27

The following reported genes could not be linked automatically to a zebrafish gene:

  • C8orf13
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