vcana

Ensembl ID:

ENSDARG00000078680

ZFIN ID:

ZDB-GENE-011023-1

Description:

Novel protein similar to vertebrate chondroitin sulfate proteoglycan 2 (Versican) (CSPG2) [Source:Un

Human Orthologue:

VCAN

Human Description:

versican [Source:HGNC Symbol;Acc:2464]

Mouse Orthologue:

Vcan

Mouse Description:

versican Gene [Source:MGI Symbol;Acc:MGI:102889]

Alleles

There are 14 alleles of this gene:

Mutation Details

Allele Name:

sa1460

Current Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC

Mutation:

A > T

Consequence:

Nonsense

Genomic Location (Zv9):

Chromosome 5 (position 48039943)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	5	45828683
GRCz11	5	46428836

KASP Assay ID:

554-1385.1 (used for ordering genotyping assays from LGC Genomics)

KASP Sequence:

CTGGCTGTTTTGGAAACCTGCCTGGAAAACCTGGTGTTAGGTCGTATGGC[A/T]AACGGAAACCCACAGAAACTTATGATGTGTTCTGTTATGTGGATAAACTT

Associated Phenotype:

Normal

Stage	Entity	Quality	Tag
Larval:Day 5 ZFS:0000037	whole organism ZFA:0001094	quality PATO:0000001	normal PATO:0000461

Mutation Details

Allele Name:

sa1563

Current Status:

F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

We currently estimate that this allele will be available during 2018.

Mutation:

G > T

Consequence:

Essential Splice Site

Genomic Location (Zv9):

Chromosome 5 (position 48057817)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	5	45846557
GRCz11	5	46446710

KASP Assay ID:

554-1506.1 (used for ordering genotyping assays from LGC Genomics)

KASP Sequence:

AAGATACCGTGTCAGCCAGTTTTTCTTCAAGCTTTCCATCAACAGAGTCA[G/T]CAAGTTCAAAACATGGGACCTCTGACATRTATAGCAAAGAGTTTAAAACA

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa38500

Current Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

We currently estimate that this allele will be available during 2018.

Mutation:

A > T

Consequence:

Essential Splice Site

Genomic Location (Zv9):

Chromosome 5 (position 48058208)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	5	45846948
GRCz11	5	46447101

KASP Assay ID:

None (used for ordering genotyping assays from LGC Genomics)

KASP Sequence:

None

Flanking Sequence:

ATCTGAATCTACTGTAACTTATGTATCAGAGACACTGTCCTCCTCTGCTC[A/T]GACAAGATATTTAGACAAGCCATTATCTGAAAGCACTGACACAGAAACCT

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa8951

Current Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

We currently estimate that this allele will be available during 2018.

Mutation:

G > A

Consequence:

Essential Splice Site

Genomic Location (Zv9):

Chromosome 5 (position 48059356)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	5	45848096
GRCz11	5	46448249

KASP Assay ID:

None (used for ordering genotyping assays from LGC Genomics)

KASP Sequence:

GTACAGAACCTGCCTTTTCTCTTCTGAATWTATCTACCGAATTWAGCGAA[G/A]TGTATACATTAACACCATTGAATACTGGGTACTCAACAGACAAAAGTGAA

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa40547

Current Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

We currently estimate that this allele will be available during 2018.

Mutation:

T > C

Consequence:

Essential Splice Site

Genomic Location (Zv9):

Chromosome 5 (position 48059357)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	5	45848097
GRCz11	5	46448250

KASP Assay ID:

None (used for ordering genotyping assays from LGC Genomics)

KASP Sequence:

None

Flanking Sequence:

TACAGAACCTGCCTTTTCTCTTCTGAATTTATCTACCGAATTTAGCGAAG[T/C]GTATACATTAACACCATTGAATACTGGGTACTCAACAGACAAAAGTGAAG

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa15805

Current Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC
Order Allele From EZRC

Mutation:

G > A

Consequence:

Essential Splice Site

Genomic Location (Zv9):

Chromosome 5 (position 48062030)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	5	45850770
GRCz11	5	46450923

KASP Assay ID:

None (used for ordering genotyping assays from LGC Genomics)

KASP Sequence:

TAMAAGCCAAGATACTGCATTAACAGAAAGAAMAGTCACAAATCAAARTA[G/A]TACACCTTTCACAGRAACAACTGCAGCAAMTRTTATGAAGGATGAAGAAK

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa40548

Current Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

We currently estimate that this allele will be available during 2018.

Mutation:

T > A

Consequence:

Nonsense

Genomic Location (Zv9):

Chromosome 5 (position 48062747)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	5	45851487
GRCz11	5	46451640

KASP Assay ID:

None (used for ordering genotyping assays from LGC Genomics)

KASP Sequence:

None

Flanking Sequence:

TTCATCTCTTTTATCTACTGCATCTATGACAAAACATACATTTACATCAT[T/A]GAGCACTGGGGAATCAACAGGACAGACCGTTGCAAGCCAAGATACTGCAT

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa17331

Current Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC
Order Allele From EZRC

Mutation:

A > T

Consequence:

Essential Splice Site

Genomic Location (Zv9):

Chromosome 5 (position 48063813)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	5	45852553
GRCz11	5	46452706

KASP Assay ID:

None (used for ordering genotyping assays from LGC Genomics)

KASP Sequence:

ACAGATGCTGCTGTCAMAAGCACACAATCATCAGAGAAGACAACAGCCAG[A/T]GATTTTTTTKCAACTTCAACAATAGCAWCAATTTTGTCTTTTTCAGAGTC

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa17829

Current Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC
Order Allele From EZRC

Mutation:

T > C

Consequence:

Essential Splice Site

Genomic Location (Zv9):

Chromosome 5 (position 48072456)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	5	45861196
GRCz11	5	46461349

KASP Assay ID:

None (used for ordering genotyping assays from LGC Genomics)

KASP Sequence:

ATTTTGTTGAAGGACAMAGAGCTGTYAGCAAACCCAWCTGTATTAATCAG[T/C]ACTGATGTTTCAGAGACAATGTCCAGCTCAACAGATCMTGATGTCACAAG

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa15511

Current Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC
Order Allele From EZRC

Mutation:

A > T

Consequence:

Nonsense

Genomic Location (Zv9):

Chromosome 5 (position 48074365)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	5	45863105
GRCz11	5	46463258

KASP Assay ID:

None (used for ordering genotyping assays from LGC Genomics)

KASP Sequence:

TCACAATGATCTCAGAGAAAACARCTCTGTCATCRTCATATTTTYCTTCT[A/T]GATTGCCATCAACAGAATCCSACTTTTCTGGGGATTACAGCTCTGAAATG

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa17232

Current Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC
Order Allele From EZRC

Mutation:

T > A

Consequence:

Nonsense

Genomic Location (Zv9):

Chromosome 5 (position 48074444)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	5	45863184
GRCz11	5	46463337

KASP Assay ID:

None (used for ordering genotyping assays from LGC Genomics)

KASP Sequence:

TGGGGATTACAGCTCTGAAATGCTAAGCAAAGAGTTTACAAMAAGTCCTT[T/A]GCCRTACACTAYAACAAAATCMGGCCTAGAATTCAGTAAAACCCCAAACA

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa33699

Current Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

We currently estimate that this allele will be available during 2018.

Mutation:

G > A

Consequence:

Essential Splice Site

Genomic Location (Zv9):

Chromosome 5 (position 48075458)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	5	45864198
GRCz11	5	46464351

KASP Assay ID:

None (used for ordering genotyping assays from LGC Genomics)

KASP Sequence:

None

Flanking Sequence:

CATCACTATAACACAAAGTTCCAACACTATCACCTCTGTACTTTCAGACA[G/A]TGAGGGTTCTGGTGTTGTAGAAGATGACCGGGAAACTGCACAGTTAGACG

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa20520

Current Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC

Mutation:

C > A

Consequence:

Nonsense

Genomic Location (Zv9):

Chromosome 5 (position 48076010)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	5	45864750
GRCz11	5	46464903

KASP Assay ID:

None (used for ordering genotyping assays from LGC Genomics)

KASP Sequence:

None

Flanking Sequence:

GTTACCAGACGATTCTACAGGTTATGTATTCAGAACACCAACAACTAAGT[C/A]ATATGATGATCTAACTGTAAGAACAGATGAGGCAGAAGTGGATGAAACTG

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa2210

Current Status:

F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

We currently estimate that this allele will be available during 2018.

Mutation:

G > A

Consequence:

Essential Splice Site

Genomic Location (Zv9):

Chromosome 5 (position 48092692)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	5	45881432
GRCz11	5	46481585

KASP Assay ID:

554-2637.1 (used for ordering genotyping assays from LGC Genomics)

KASP Sequence:

TATTTCTACAGGGNNNNNNNNNNNNNNNNNTCACAATCCTTACCTCTATCTGTGTTCTTCCTCTACA[G/A]CAATATGAAAACTGGAGACCGAACCAGCCGGACAGTTTCTTCTCCTCCGG

Associated Phenotype:

Not determined

GWAS

This gene's human homologue has been identified in the following GWAS studies:

• Major depressive disorder: Genome-wide association study of major recurrent depression in the U.K. population. (View Study)

(GWAS data comes from http://www.genome.gov/gwastudies/.)

OMIM

• Wagner syndrome 1

More OMIM information for VCAN

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