si:ch211-215c3.2

Ensembl ID:

ENSDARG00000076171

ZFIN ID:

ZDB-GENE-090312-211

Description:

Novel protein similar to H.sapiens ZNF827, zinc finger protein 827 (ZNF827) [Source:UniProtKB/TrEMBL

Human Orthologue:

ZNF827

Human Description:

zinc finger protein 827 [Source:HGNC Symbol;Acc:27193]

Mouse Orthologue:

Zfp827

Mouse Description:

zinc finger protein 827 Gene [Source:MGI Symbol;Acc:MGI:2444807]

Alleles

There are 6 alleles of this gene:

Mutation Details

Allele Name:

sa18170

Current Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

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Mutation:

C > A

Consequence:

Nonsense

Genomic Location (Zv9):

Chromosome 1 (position 35826973)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	1	35386831
GRCz11	1	36118858

KASP Assay ID:

None (used for ordering genotyping assays from LGC Genomics)

KASP Sequence:

AGCCGCCAACGCCGTGCTCCAAGACAAGAACGCGGTGGCCTCCTCCACCT[C/A]GGCATCTTCATCCTCCTCGTCCTCCTCCTCATCCTCTTCAGTCACCTCCT

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa19530

Current Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

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Mutation:

C > T

Consequence:

Nonsense

Genomic Location (Zv9):

Chromosome 1 (position 35786565)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	1	35346423
GRCz11	1	36078450

KASP Assay ID:

None (used for ordering genotyping assays from LGC Genomics)

KASP Sequence:

None

Flanking Sequence:

AACCAAGAGAGGAGGGGAGCCCGATGTTGGGCAAGAGCAGCCTTCTCAGC[C/T]AGGACATCAACGTCAAAGTGGCCTCTGAATTGCTTATGAAGCTCTCAGGT

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa4854

Current Status:

F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

We currently estimate that this allele will be available during 2018.

Mutation:

T > A

Consequence:

Nonsense

Genomic Location (Zv9):

Chromosome 1 (position 35765317)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	1	35325175
GRCz11	1	36057202

KASP Assay ID:

554-3542.1 (used for ordering genotyping assays from LGC Genomics)

KASP Sequence:

TTCAGGACCATGTGAAAAGAAGGAACCAATGGTCAACCTCCMAGATCATT[T/A]GCCCCGCCCCCAGAATGACCTCTTCTCGCAGGACATATCGGTCAAAATGG

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa9707

Current Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

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Mutation:

T > A

Consequence:

Nonsense

Genomic Location (Zv9):

Chromosome 1 (position 35745049)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	1	35304907
GRCz11	1	36036934

KASP Assay ID:

None (used for ordering genotyping assays from LGC Genomics)

KASP Sequence:

TGCTTTGTCTCTACAGAAGAGAGGAAATACAAGTGTCATTTGTGTCCATA[T/A]GCAGCTAAGTGCCGAGCMAACCTCAACCAGCACCTCACCATCCACTCAGT

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa12453

Current Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

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Mutation:

T > C

Consequence:

Essential Splice Site

Genomic Location (Zv9):

Chromosome 1 (position 35740349)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	1	35300207
GRCz11	1	36032234

KASP Assay ID:

None (used for ordering genotyping assays from LGC Genomics)

KASP Sequence:

GGAAGCCAATCAAGCTTAGGCCCAGGAGCAGAGGAAAAAGCAGAGAAAGG[T/C]GAGACTTTTAGCAGATACACCTAGCGCATTTTATCCCTGATTAAGAGTGA

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa14020

Current Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

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Mutation:

C > A

Consequence:

Nonsense

Genomic Location (Zv9):

Chromosome 1 (position 35737849)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	1	35297707
GRCz11	1	36029734

KASP Assay ID:

None (used for ordering genotyping assays from LGC Genomics)

KASP Sequence:

GGCTTTGAATGCGTCTTCTGCAACTTTGTGTGTAAAACCCGACCCATGTA[C/A]GAGCGGCACCTAMAGATCCACCTGATCAYGYGCATGTTTGAGTGTGACGT

Associated Phenotype:

Not determined

GWAS

This gene's human homologue has been identified in the following GWAS studies:

• Dental caries: GWAS of dental caries patterns in the permanent dentition. (View Study)
• Immune response to smallpox vaccine (IL-6): Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients. (View Study)
• Liver enzyme levels (gamma-glutamyl transferase): Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma. (View Study)
• Triglycerides: Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits. (View Study)

(GWAS data comes from http://www.genome.gov/gwastudies/.)

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