wu:fc32f04

Ensembl ID:
ENSDARG00000019045
ZFIN IDs:
ZDB-GENE-030131-3273, ZDB-GENE-030131-3273
Description:
Wu:fc32f04 protein [Source:UniProtKB/TrEMBL;Acc:Q803F8]
Human Orthologues:
AC002365.1, AC003980.1, AC006062.1, AC006999.1, AC007379.1, AC008162.1, AC008573.1, AC008794.1, AC010133.1, AC011503.2, AC012596.1, AC016595.1, AC018553.1, AC022409.1, AC022486.1, AC023481.1, AC067941.1, AC091492.1, AC092485.1, AC097714.1, AC116351.3, AC145210.1, AL121899.1, AL138690.1, AL159986.1, AL357512.1, RBM25, TCHH, TRAF3IP1, ZC3H13
Human Descriptions:
RNA binding motif protein 25 [Source:HGNC Symbol;Acc:23244]
TNF receptor-associated factor 3 interacting protein 1 [Source:HGNC Symbol;Acc:17861]
trichohyalin [Source:HGNC Symbol;Acc:11791]
zinc finger CCCH-type containing 13 [Source:HGNC Symbol;Acc:20368]
Mouse Orthologues:
Gm10563, Rbm25, Tchh, Traf3ip1, Zc3h13
Mouse Descriptions:
predicted gene 10563 Gene [Source:MGI Symbol;Acc:MGI:3642630]
RNA binding motif protein 25 Gene [Source:MGI Symbol;Acc:MGI:1914289]
TRAF3 interacting protein 1 Gene [Source:MGI Symbol;Acc:MGI:1921269]
trichohyalin Gene [Source:MGI Symbol;Acc:MGI:2177944]
zinc finger CCCH type containing 13 Gene [Source:MGI Symbol;Acc:MGI:1914552]

Alleles

There are 3 alleles of this gene:

Allele name Consequence Status Availability Estimate
hu3565 Nonsense Available for shipment Available now
sa39429 Nonsense Mutation detected in F1 DNA During 2018
sa44060 Nonsense Mutation detected in F1 DNA During 2018

Mutation Details

Allele Name:
hu3565
Current Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
C > T
Consequence:
Nonsense
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000004357 Nonsense 122 672 5 8
ENSDART00000058357 Nonsense 128 757 5 9
Genomic Location (Zv9):
Chromosome 23 (position 45167820)
Other Location(s):
Assembly Chromosome Position
GRCz10 23 45492013
GRCz11 23 45205333
KASP Assay ID:
None (used for ordering genotyping assays from LGC Genomics)
KASP Sequence:
None
Flanking Sequence:
CAGAGAGTCGACTAAAGTGGAAAAACAAGAAGAAGAAGAAAGCAGAAAAT[C/T]AGACTGAAGTGAAGAAACCCCCAAAATCAGCTAAAGATCCAGTGTCGAAT
Associated Phenotype:

Normal

Stage Entity Quality Tag
Larval:Day 5
ZFS:0000037
whole organism
ZFA:0001094
quality
PATO:0000001
normal
PATO:0000461

Mutation Details

Allele Name:
sa39429
Current Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
We currently estimate that this allele will be available during 2018.
Mutation:
A > T
Consequence:
Nonsense
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000004357 Nonsense 240 672 5 8
ENSDART00000058357 Nonsense 246 757 5 9
Genomic Location (Zv9):
Chromosome 23 (position 45167466)
Other Location(s):
Assembly Chromosome Position
GRCz10 23 45492367
GRCz11 23 45205687
KASP Assay ID:
None (used for ordering genotyping assays from LGC Genomics)
KASP Sequence:
None
Flanking Sequence:
TTTCTGCTCACAGGAAACACGTGCTGAATAGGAAGATCATCTCCACGGCC[A/T]AGAAAAGGATTGATGCTGTTAATCACAGAAAGGTTTGCTGTCATTCTCTG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa44060
Current Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
We currently estimate that this allele will be available during 2018.
Mutation:
G > T
Consequence:
Nonsense
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000004357 Nonsense 593 672 8 8
ENSDART00000058357   None 757 None 9
Genomic Location (Zv9):
Chromosome 23 (position 45163924)
Other Location(s):
Assembly Chromosome Position
GRCz10 23 45495909
GRCz11 23 45209229
KASP Assay ID:
None (used for ordering genotyping assays from LGC Genomics)
KASP Sequence:
None
Flanking Sequence:
ATAACGAGTCTGAAAAGAGAGAGGCAGGAAAGAGCGAGTCTGAAATGAAA[G/T]AGGCAAGAAAGAATGAGTCAGAAAAGAAAGAGGCCAGAAAGAGAGAGACT
Associated Phenotype:
Not determined

GWAS

This gene's human homologue has been identified in the following GWAS studies:

  • Hair color: Web-based, participant-driven studies yield novel genetic associations for common traits. (View Study)
  • Hair morphology: Common variants in the trichohyalin gene are associated with straight hair in Europeans. (View Study)
  • Iris characteristics: GWAS findings for human iris patterns: associations with variants in genes that influence normal neuronal pattern development. (View Study)

(GWAS data comes from http://www.genome.gov/gwastudies/.)

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