ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_3__9 (TPF updated: 2018-01-16)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CH211-221B16
alt_ctg9_3_1
zC221B16
EPN details
BX510646.5
finished
2 DKEY-14B2
alt_ctg9_3_1
zK14B2
EPN details
BX663615.15
finished
3 CH211-93A19
alt_ctg9_3_1
zC93A19
EPN details
AL929161.10
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 196723 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX510646.5 1 196723 +
196724 407223 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX663615.15 1 210500 -
407224 583353 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AL929161.10 1 176130 -

Details

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# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH211-221B16
alt_ctg9_3_1
zC221B16
-
-
BX510646.5
finished
200321 CHORI-211 3' / 3'
196723 / 210500
- / -
5641
0
Identified
2017-03-07
agp2oracle
humpub
 
2 DKEY-14B2
alt_ctg9_3_1
zK14B2
-
-
BX663615.15
finished
212543 DanioKey 5' / 3'
1 / 176130
- / -
20897
0
Identified
2017-03-07
agp2oracle
humpub
 
3 CH211-93A19
alt_ctg9_3_1
zC93A19
-
-
AL929161.10
finished
197027 CHORI-211        

Statistics

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Clone Summary

Number of gaps
0
Total clones
3
Clone HTGS Phases
finished
3
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
26,538
Total finished length of fin clones w/ overlap
609,891
Total finished length of fin clones w/o overlap
583,353
Total overlap length of fin+unfin clones
26,538
Total finished length of fin+unfin clones w/ overlap
609,891
Total finished length of fin+unfin clones w/o overlap
583,353

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