ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_3__5 (TPF updated: 2018-01-16)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CH73-370G22
alt_ctg5_3_1
zH370G22
EPN details
FP016145.14
finished
2 CH211-138M12
alt_ctg5_3_1
zC138M12
EPN details
AL954311.13
finished
3 CH1073-211I21
alt_ctg5_3_1
zFD211I21
EPN details
CU914560.4
finished
  GAP (type-3) length unknown    
5 DKEY-17O15
alt_ctg5_3_2
zK17O15
EPN details
BX927261.8
finished
6 DKEY-170H15
alt_ctg5_3_2
zK170H15
EPN details
CR392013.8
finished
7 CH73-270N7
alt_ctg5_3_2
zH270N7
EPN details
FP017278.6
finished
  GAP (type-3) length unknown    
9 CH211-127D4
alt_ctg5_3_3
zC127D4
EPN details
AL928954.9
finished
10 CH211-281A24
alt_ctg5_3_3
zC281A24
EPN details
BX936403.9
finished
11 CH211-131C14
alt_ctg5_3_3
zC131C14
EPN details
CR391969.13
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 101039 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 FP016145.14 1 101039 +
101040 269460 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AL954311.13 1 168421 +
269461 272811 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CU914560.4 3995 7345 +
272812 322811 4 N 50000 contig no
322812 493711 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX927261.8 56423 227322 -
493712 680902 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CR392013.8 1 187191 +
680903 692724 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 FP017278.6 1 11822 -
692725 742724 8 N 50000 contig no
742725 951204 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 AL928954.9 1 208480 +
951205 1093987 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 BX936403.9 126 142908 -
1093988 1126501 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 CR391969.13 126736 159249 +

Details

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# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH73-370G22
alt_ctg5_3_1
zH370G22
-
-
FP016145.14
finished
104713 CHORI-73 3' / 5'
101039 / 1
- / -
3674
0
Identified
2017-03-07
agp2oracle
humpub
 
2 CH211-138M12
alt_ctg5_3_1
zC138M12
-
-
AL954311.13
finished
168421 CHORI-211 3' / 5'
168421 / 3995
- / -
3994
0
Identified
2017-03-07
agp2oracle
humpub
 
3 CH1073-211I21
alt_ctg5_3_1
zFD211I21
-
-
CU914560.4
finished
7345 CHORI1073        
  GAP (type-3) length unknown                  
5 DKEY-17O15
alt_ctg5_3_2
zK17O15
-
-
BX927261.8
finished
227322 DanioKey 5' / 5'
56423 / 1
- / -
56422
0
Identified
2017-03-07
agp2oracle
humpub
 
6 DKEY-170H15
alt_ctg5_3_2
zK170H15
-
-
CR392013.8
finished
187191 DanioKey 3' / 3'
187191 / 11822
- / -
71296
0
Identified
2017-03-07
agp2oracle
humpub
 
7 CH73-270N7
alt_ctg5_3_2
zH270N7
-
-
FP017278.6
finished
83118 CHORI-73        
  GAP (type-3) length unknown                  
9 CH211-127D4
alt_ctg5_3_3
zC127D4
-
-
AL928954.9
finished
222888 CHORI-211 3' / 3'
208480 / 142908
- / -
14408
0
Identified
2017-03-07
agp2oracle
humpub
 
10 CH211-281A24
alt_ctg5_3_3
zC281A24
-
-
BX936403.9
finished
142908 CHORI-211 5' / 5'
126 / 126736
- / -
126860
0
Identified
2017-03-07
agp2oracle
humpub
 
11 CH211-131C14
alt_ctg5_3_3
zC131C14
-
-
CR391969.13
finished
159249 CHORI-211        

Statistics

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Clone Summary

Number of gaps
2
Gap types
type-3
2
Total clones
9
Clone HTGS Phases
finished
9
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
276,654
Total finished length of fin clones w/ overlap
1,303,155
Total finished length of fin clones w/o overlap
1,026,501
Total overlap length of fin+unfin clones
276,654
Total finished length of fin+unfin clones w/ overlap
1,303,155
Total finished length of fin+unfin clones w/o overlap
1,026,501

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