ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_3__6 (TPF updated: 2018-01-16)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CH211-140C22
alt_ctg6_3_1
zC140C22
BX927248.6
finished
2 CH211-147M4
alt_ctg6_3_1
zC147M4
BX321879.14
finished
3 CH211-15L16
alt_ctg6_3_1
zC15L16
BX004768.5
finished
  GAP (type-3) length unknown    
5 DKEY-107I22
alt_ctg6_3_2
zK107I22
CR626936.8
finished
6 DKEYP-30B3
alt_ctg6_3_2
zKp30B3
CR847938.10
finished
7 CH73-14H10
alt_ctg6_3_2
zH14H10
FP101882.5
finished
  GAP (type-3) length unknown    
9 DKEY-149G8
alt_ctg6_3_3
CONTAINER
zK149G8
AL954637.6
finished
10 DKEYP-77B12
alt_ctg6_3_3
CONTAINED
zKp77B12
BX546445.7
finished
9 DKEY-149G8
alt_ctg6_3_3
CONTAINER
zK149G8
AL954637.6
finished
  GAP (type-3) length unknown    
12 DKEY-60G10
alt_ctg6_3_4
zK60G10
CR933860.7
finished
13 DKEY-28P22
alt_ctg6_3_4
zK28P22
AL953891.10
finished
14 DKEY-87O12
alt_ctg6_3_4
zK87O12
CR855206.9
finished
  GAP (type-3) length unknown    
16 DKEY-50M7
alt_ctg6_3_5
zK50M7
CR385041.16
finished
17 DKEY-50G15
alt_ctg6_3_5
zK50G15
AL954812.14
finished
18 DKEY-61C16
alt_ctg6_3_5
zK61C16
BX901944.17
finished
  GAP (type-3) length unknown    
20 CH211-233B16
alt_ctg6_3_6
zC233B16
AL954698.9
finished
21 DKEY-105A17
alt_ctg6_3_6
zK105A17
BX548005.11
finished
22 DKEY-74L3
alt_ctg6_3_6
zK74L3
BX957338.16
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 81373 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX927248.6 1 81373 +
81374 242296 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX321879.14 2001 162923 +
242297 248907 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX004768.5 173695 180305 +
248908 298907 4 N 50000 contig no
298908 372706 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CR626936.8 2002 75800 -
372707 531272 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CR847938.10 10692 169257 -
531273 535259 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 FP101882.5 138568 142554 +
535260 585259 8 N 50000 contig no
585260 726981 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 AL954637.6 1 141722 +
726982 727314 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 BX546445.7 141269 141601 +
727315 747126 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 AL954637.6 142056 161867 +
747127 797126 12 N 50000 contig no
797127 965859 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 CR933860.7 11950 180682 -
965860 1206066 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 AL953891.10 39 240245 -
1206067 1328773 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 CR855206.9 1 122707 -
1328774 1378773 16 N 50000 contig no
1378774 1468817 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 CR385041.16 1 90044 +
1468818 1661121 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 AL954812.14 1 192304 -
1661122 1674571 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 BX901944.17 96759 110208 +
1674572 1724571 20 N 50000 contig no
1724572 1834220 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 AL954698.9 67513 177161 -
1834221 2052456 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 BX548005.11 1 218236 -
2052457 2054521 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 BX957338.16 163132 165196 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
5
Gap types
type-3
5
Total clones
17
Clone HTGS Phases
finished
17
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
958,254
Total finished length of fin clones w/ overlap
2,742,963
Total finished length of fin clones w/o overlap
1,784,709
Total overlap length of fin+unfin clones
958,254
Total finished length of fin+unfin clones w/ overlap
2,742,963
Total finished length of fin+unfin clones w/o overlap
1,784,709

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