ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_3__1 (TPF updated: 2018-01-16)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 DKEY-253I9
alt_ctg1_3_1
zK253I9
CR762427.15
finished
2 RP71-8L21
alt_ctg1_3_1
bZ8L21
BX537132.8
finished
3 CH73-61K13
alt_ctg1_3_1
zH61K13
CT573191.7
finished
  GAP (type-3) length unknown    
5 DKEYP-26A9
alt_ctg1_3_2
zKp26A9
CR391911.15
finished
6 DKEY-215B13
alt_ctg1_3_2
zK215B13
CR769781.9
finished
7 DKEY-148F2
alt_ctg1_3_2
zK148F2
CR376790.8
finished
8 CH211-250N21
alt_ctg1_3_2
zC250N21
CR385070.5
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 90027 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CR762427.15 1 90027 +
90028 222314 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX537132.8 1 132287 +
222315 295456 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CT573191.7 1 73142 -
295457 345456 4 N 50000 contig no
345457 401713 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 8 CR391911.15 137859 194115 -
401714 581940 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 8 CR769781.9 1 180227 -
581941 709435 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 8 CR376790.8 1 127495 -
709436 756077 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 8 CR385070.5 47127 93768 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
1
Gap types
type-3
1
Total clones
7
Clone HTGS Phases
finished
7
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
321,851
Total finished length of fin clones w/ overlap
1,027,928
Total finished length of fin clones w/o overlap
706,077
Total overlap length of fin+unfin clones
321,851
Total finished length of fin+unfin clones w/ overlap
1,027,928
Total finished length of fin+unfin clones w/o overlap
706,077

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