ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_2__15 (TPF updated: 2018-01-16)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 DKEYP-98F5
alt_ctg15_2_1
zKp98F5
EPN details
BX323573.7
finished
2 DKEY-27J17
alt_ctg15_2_1
zK27J17
EPN details
AL954188.10
finished
3 CH211-197E18
alt_ctg15_2_1
zC197E18
EPN details
BX293559.5
finished
  GAP (type-3) length unknown    
5 CH211-24O10
alt_ctg15_2_2
zC24O10
EPN details
BX572630.10
finished
6 DKEYP-67B10
alt_ctg15_2_2
zKp67B10
EPN details
BX294000.11
finished
7 CH73-223P23
alt_ctg15_2_2
zH223P23
EPN details
CU861501.9
finished
  GAP (type-3) length unknown    
9 DKEYP-118B3
alt_ctg15_2_3
CONTAINER
zKp118B3
EPN details
CR853297.8
finished
10 CH211-13K16
alt_ctg15_2_3
CONTAINED
zC13K16
EPN details
BX005141.5
finished
9 DKEYP-118B3
alt_ctg15_2_3
CONTAINER
zKp118B3
EPN details
CR853297.8
finished
  GAP (type-3) length unknown    
12 DKEY-151P21
alt_ctg15_2_4
zK151P21
EPN details
CR524483.7
finished
13 DKEY-21I14
alt_ctg15_2_4
zK21I14
EPN details
BX005404.7
finished
14 CH211-198E20
alt_ctg15_2_4
Cl/Pr zC198E20/zC110E4 swap
EPN details
BX908796.11
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 100165 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX323573.7 81530 181694 -
100166 311136 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AL954188.10 1 210971 -
311137 350482 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX293559.5 98950 138295 +
350483 400482 4 N 50000 contig no
400483 477957 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX572630.10 1 77475 +
477958 630726 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX294000.11 1 152769 +
630727 633420 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CU861501.9 51433 54126 +
633421 683420 8 N 50000 contig no
683421 702966 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 CR853297.8 1 19546 +
702967 869542 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 BX005141.5 1 166576 -
869543 878714 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 CR853297.8 173112 182283 +
878715 928714 12 N 50000 contig no
928715 1125433 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 CR524483.7 1 196719 +
1125434 1355014 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 BX005404.7 1 229581 +
1355015 1442038 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 BX908796.11 1 87024 -

Details

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# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 DKEYP-98F5
alt_ctg15_2_1
zKp98F5
-
-
BX323573.7
finished
181694 DanioKeypilot 5' / 3'
81530 / 210971
- / -
81529
0
Identified
2017-03-07
agp2oracle
humpub
 
2 DKEY-27J17
alt_ctg15_2_1
zK27J17
-
-
AL954188.10
finished
210971 DanioKey 5' / 5'
1 / 98950
- / -
98949
0
Identified
2017-03-07
agp2oracle
humpub
 
3 CH211-197E18
alt_ctg15_2_1
zC197E18
-
-
BX293559.5
finished
138295 CHORI-211        
  GAP (type-3) length unknown                  
5 CH211-24O10
alt_ctg15_2_2
zC24O10
-
-
BX572630.10
finished
174316 CHORI-211 3' / 5'
77475 / 1
- / -
96841
0
Identified
2017-03-07
agp2oracle
humpub
 
6 DKEYP-67B10
alt_ctg15_2_2
zKp67B10
-
-
BX294000.11
finished
197371 DanioKeypilot 3' / 5'
152769 / 51433
- / -
96034
0
Identified
2017-03-07
agp2oracle
humpub
 
7 CH73-223P23
alt_ctg15_2_2
zH223P23
-
-
CU861501.9
finished
54126 CHORI-73        
  GAP (type-3) length unknown                  
9 DKEYP-118B3
alt_ctg15_2_3
CONTAINER
zKp118B3
-
-
CR853297.8
finished
182283 DanioKeypilot 3' / 3'
19546 / 166576
- / -
166576
0
Identified
2017-03-07
agp2oracle
humpub
 
10 CH211-13K16
alt_ctg15_2_3
CONTAINED
zC13K16
-
-
BX005141.5
finished
166576 CHORI-211 5' / 5'
1 / 173112
- / -
166576
0
Identified
2017-03-07
agp2oracle
humpub
 
9 DKEYP-118B3
alt_ctg15_2_3
CONTAINER
zKp118B3
-
-
CR853297.8
finished
182283 DanioKeypilot        
  GAP (type-3) length unknown                  
12 DKEY-151P21
alt_ctg15_2_4
zK151P21
-
-
CR524483.7
finished
210342 DanioKey 3' / 5'
196719 / 1
- / -
13623
0
Identified
2017-03-07
agp2oracle
humpub
 
13 DKEY-21I14
alt_ctg15_2_4
zK21I14
-
-
BX005404.7
finished
229643 DanioKey 3' / 3'
229581 / 87024
- / -
117665
0
Identified
2017-03-07
agp2oracle
humpub
 
14 CH211-198E20
alt_ctg15_2_4
zC198E20
-
-
BX908796.11
finished
204627 CHORI-211        

Statistics

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Clone Summary

Number of gaps
3
Gap types
type-3
3
Total clones
11
Clone HTGS Phases
finished
11
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
596,437
Total finished length of fin clones w/ overlap
1,950,244
Total finished length of fin clones w/o overlap
1,353,807
Total overlap length of fin+unfin clones
596,437
Total finished length of fin+unfin clones w/ overlap
1,950,244
Total finished length of fin+unfin clones w/o overlap
1,353,807

Dovetails

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# rank accession status length date
1 3 BX293559 unfinished 39,346 Tue, 16 Jan 2018 06:55

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