ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_2__17 (TPF updated: 2018-01-16)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 DKEY-49F1
alt_ctg17_2_1
zK49F1
EPN details
AL772209.5
finished
2 DKEY-153J5
alt_ctg17_2_1
zK153J5
EPN details
BX004833.16
finished
3 DKEY-51K10
alt_ctg17_2_1
zK51K10
EPN details
AL772219.7
finished
  GAP (type-3) length unknown    
5 CH73-215M14
alt_ctg17_2_2
zH215M14
EPN details
CU104709.5
finished
6 CH211-196N11
alt_ctg17_2_2
zC196N11
EPN details
AL772132.6
finished
7 DKEY-81J11
alt_ctg17_2_2
zK81J11
EPN details
BX005403.15
finished
8 CH211-125O16
alt_ctg17_2_2
zC125O16
EPN details
BX511245.6
finished
  GAP (type-3) length unknown    
10 CH211-153A19
alt_ctg17_2_3
zC153A19
EPN details
BX511309.12
finished
11 DKEY-210F16
alt_ctg17_2_3
zK210F16
EPN details
BX322796.12
finished
12 DKEYP-118G11
alt_ctg17_2_3
zKp118G11
EPN details
CR759748.6
finished
  GAP (type-3) length unknown    
14 CH211-195B21
alt_ctg17_2_4
zC195B21
EPN details
AL935174.11
finished
15 CH211-149K12
alt_ctg17_2_4
CONTAINER
zC149K12
EPN details
AL929195.14
finished
16 DKEY-6K10
alt_ctg17_2_4
CONTAINED
zK6K10
EPN details
CR854843.16
finished
15 CH211-149K12
alt_ctg17_2_4
CONTAINER
zC149K12
EPN details
AL929195.14
finished
  GAP (type-3) length unknown    
18 DKEY-28J9
alt_ctg17_2_5
zK28J9
EPN details
BX649437.8
finished
19 DKEY-261O7
alt_ctg17_2_5
zK261O7
EPN details
BX511087.12
finished
20 CH211-243K10
alt_ctg17_2_5
zC243K10
EPN details
CR384057.25
finished
  GAP (type-3) length unknown    
22 DKEY-58K6
alt_ctg17_2_6
CONTAINER
zK58K6
EPN details
BX539343.9
finished
23 DKEY-215J3
alt_ctg17_2_6
CONTAINED
zK215J3
EPN details
CR749769.6
finished
22 DKEY-58K6
alt_ctg17_2_6
CONTAINER
zK58K6
EPN details
BX539343.9
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 94110 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AL772209.5 1 94110 +
94111 310300 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX004833.16 1 216190 +
310301 323232 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AL772219.7 104313 117244 +
323233 373232 4 N 50000 contig no
373233 389737 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 8 CU104709.5 71614 88118 -
389738 591543 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 8 AL772132.6 3997 205802 +
591544 663912 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 8 BX005403.15 1 72369 -
663913 713846 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 8 BX511245.6 46754 96687 +
713847 763846 9 N 50000 contig no
763847 813785 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 12 BX511309.12 1 49939 +
813786 882019 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 12 BX322796.12 1 68234 -
882020 1008532 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 12 CR759748.6 1 126513 -
1008533 1058532 13 N 50000 contig no
1058533 1254138 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 17 AL935174.11 1 195606 +
1254139 1254139 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 17 AL929195.14 125405 125405 -
1254140 1326552 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 17 CR854843.16 1 72413 -
1326553 1358377 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 17 AL929195.14 1 31825 -
1358378 1408377 18 N 50000 contig no
1408378 1512684 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 BX649437.8 54040 158346 -
1512685 1696696 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 BX511087.12 1 184012 +
1696697 1811029 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 CR384057.25 1 114333 -
1811030 1861029 22 N 50000 contig no
1861030 1889211 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 25 BX539343.9 163067 191248 -
1889212 2053693 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 25 CR749769.6 6512 170993 +
2053694 2058630 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 25 BX539343.9 1 4937 -

Details

Help

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 DKEY-49F1
alt_ctg17_2_1
zK49F1
-
-
AL772209.5
finished
202805 DanioKey 3' / 5'
94110 / 1
- / -
108695
0
Identified
2017-03-07
agp2oracle
humpub
 
2 DKEY-153J5
alt_ctg17_2_1
zK153J5
-
-
BX004833.16
finished
216190 DanioKey 3' / 5'
216190 / 104313
- / -
104312
0
Identified
2017-03-07
agp2oracle
humpub
 
3 DKEY-51K10
alt_ctg17_2_1
zK51K10
-
-
AL772219.7
finished
117244 DanioKey        
  GAP (type-3) length unknown                  
5 CH73-215M14
alt_ctg17_2_2
zH215M14
-
-
CU104709.5
finished
88118 CHORI-73 5' / 5'
71614 / 3997
- / -
75609
0
Identified
2017-03-07
agp2oracle
humpub
 
6 CH211-196N11
alt_ctg17_2_2
zC196N11
-
-
AL772132.6
finished
205802 CHORI-211 3' / 3'
205802 / 72369
- / -
2000
0
Identified
2017-03-07
agp2oracle
humpub
 
7 DKEY-81J11
alt_ctg17_2_2
zK81J11
-
-
BX005403.15
finished
74369 DanioKey 5' / 5'
1 / 46754
- / -
46753
0
Identified
2017-03-07
agp2oracle
humpub
 
8 CH211-125O16
alt_ctg17_2_2
zC125O16
-
-
BX511245.6
finished
96687 CHORI-211        
  GAP (type-3) length unknown                  
10 CH211-153A19
alt_ctg17_2_3
zC153A19
-
-
BX511309.12
finished
70474 CHORI-211 3' / 3'
49939 / 68234
- / -
20535
0
Identified
2017-03-07
agp2oracle
humpub
 
11 DKEY-210F16
alt_ctg17_2_3
zK210F16
-
-
BX322796.12
finished
68234 DanioKey 5' / 3'
1 / 126513
- / -
39230
0
Identified
2017-03-07
agp2oracle
humpub
 
12 DKEYP-118G11
alt_ctg17_2_3
zKp118G11
-
-
CR759748.6
finished
165743 DanioKeypilot        
  GAP (type-3) length unknown                  
14 CH211-195B21
alt_ctg17_2_4
zC195B21
-
-
AL935174.11
finished
195606 CHORI-211 3' / 3'
195606 / 125405
- / -
14274
0
Identified
2018-01-16
agp2oracle
humpub
 
15 CH211-149K12
alt_ctg17_2_4
CONTAINER
zC149K12
-
-
AL929195.14
finished
139679 CHORI-211 5' / 3'
125405 / 72413
- / -
72413
0
Identified
2017-03-07
agp2oracle
humpub
 
16 DKEY-6K10
alt_ctg17_2_4
CONTAINED
zK6K10
-
-
CR854843.16
finished
72413 DanioKey 5' / 3'
1 / 31825
- / -
72413
0
Identified
2017-03-07
agp2oracle
humpub
 
15 CH211-149K12
alt_ctg17_2_4
CONTAINER
zC149K12
-
-
AL929195.14
finished
139679 CHORI-211        
  GAP (type-3) length unknown                  
18 DKEY-28J9
alt_ctg17_2_5
zK28J9
-
-
BX649437.8
finished
158346 DanioKey 5' / 5'
54040 / 1
- / -
54039
0
Identified
2017-03-07
agp2oracle
humpub
 
19 DKEY-261O7
alt_ctg17_2_5
zK261O7
-
-
BX511087.12
finished
184012 DanioKey 3' / 3'
184012 / 114333
- / -
40160
0
Identified
2017-03-07
agp2oracle
humpub
 
20 CH211-243K10
alt_ctg17_2_5
zC243K10
-
-
CR384057.25
finished
154493 CHORI-211        
  GAP (type-3) length unknown                  
22 DKEY-58K6
alt_ctg17_2_6
CONTAINER
zK58K6
-
-
BX539343.9
finished
191248 DanioKey 5' / 5'
163067 / 6512
- / -
170993
0
Identified
2017-03-31
agp2oracle
humpub
 
23 DKEY-215J3
alt_ctg17_2_6
CONTAINED
zK215J3
-
-
CR749769.6
finished
170993 DanioKey 3' / 3'
170993 / 4937
- / -
170993
0
Identified
2017-03-31
agp2oracle
humpub
 
22 DKEY-58K6
alt_ctg17_2_6
CONTAINER
zK58K6
-
-
BX539343.9
finished
191248 DanioKey        

Statistics

Help

Clone Summary

Number of gaps
5
Gap types
type-3
5
Total clones
18
Clone HTGS Phases
finished
18
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
775,724
Total finished length of fin clones w/ overlap
2,572,456
Total finished length of fin clones w/o overlap
1,796,732
Total overlap length of fin+unfin clones
775,724
Total finished length of fin+unfin clones w/ overlap
2,572,456
Total finished length of fin+unfin clones w/o overlap
1,796,732

Dovetails

Help

# rank accession status length date
1 1 AL772209 unfinished 41,598 Tue, 16 Jan 2018 07:44

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