ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_2__21 (TPF updated: 2018-01-16)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 DKEY-245N14
alt_ctg21_2_1
zK245N14
CR388010.8
finished
2 DKEY-11N4
alt_ctg21_2_1
zK11N4
BX005186.9
finished
3 DKEY-237I15
alt_ctg21_2_1
zK237I15
BX005302.8
finished
  GAP (type-3) length unknown    
5 DKEYP-46G10
alt_ctg21_2_2
zKp46G10
CR762400.8
finished
6 CH211-146L11
alt_ctg21_2_2
zC146L11
CR352238.8
finished
7 CH211-242A9
alt_ctg21_2_2
zC242A9
BX001031.19
finished
  GAP (type-3) length unknown    
9 DKEY-250J7
alt_ctg21_2_3
zK250J7
BX511222.10
finished
10 DKEY-4K21
alt_ctg21_2_3
zK4K21
CR848041.4
finished
11 DKEY-247M21
alt_ctg21_2_3
zK247M21
BX248308.11
finished
  GAP (type-3) length unknown    
13 DKEY-57F1
alt_ctg21_2_4
zK57F1
CR854959.9
finished
14 DKEY-180I22
alt_ctg21_2_4
zK180I22
BX324225.7
finished
15 DKEY-163I6
alt_ctg21_2_4
zK163I6
BX470072.8
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 25881 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CR388010.8 1 25881 +
25882 124525 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX005186.9 20952 119595 +
124526 217340 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX005302.8 1 92815 -
217341 267340 4 N 50000 contig no
267341 397332 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CR762400.8 1 129992 +
397333 566918 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CR352238.8 1 169586 -
566919 614623 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX001031.19 1 47705 -
614624 664623 8 N 50000 contig no
664624 692287 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 BX511222.10 1 27664 +
692288 870249 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 CR848041.4 1 177962 +
870250 1029178 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 BX248308.11 12678 171606 +
1029179 1079178 12 N 50000 contig no
1079179 1305758 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 CR854959.9 15911 242490 -
1305759 1512883 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 BX324225.7 1 207125 +
1512884 1587268 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 BX470072.8 136780 211164 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
3
Gap types
type-3
3
Total clones
12
Clone HTGS Phases
finished
12
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
575,288
Total finished length of fin clones w/ overlap
2,012,556
Total finished length of fin clones w/o overlap
1,437,268
Total overlap length of fin+unfin clones
575,288
Total finished length of fin+unfin clones w/ overlap
2,012,556
Total finished length of fin+unfin clones w/o overlap
1,437,268

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