ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_2__12 (TPF updated: 2018-01-16)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CH211-120D1
alt_ctg12_2_1
zC120D1
EPN details
CU914479.8
finished
2 DKEY-7B6
alt_ctg12_2_1
zK7B6
EPN details
CR354584.8
finished
3 DKEY-14A21
alt_ctg12_2_1
zK14A21
EPN details
CR352235.8
finished
4 CH211-57E23
alt_ctg12_2_1
zC57E23
EPN details
BX323878.10
finished
5 DKEY-16I5
alt_ctg12_2_1
zK16I5
EPN details
BX649366.5
finished
  GAP (type-3) length unknown    
7 CH211-139C17
alt_ctg12_2_2
zC139C17
EPN details
BX927102.12
finished
8 CH73-122J5
alt_ctg12_2_2
zH122J5
EPN details
CU459175.7
finished
  GAP (type-3) length unknown    
10 CH211-277E21
alt_ctg12_2_3
zC277E21
EPN details
BX248086.8
finished
11 CH211-178F18
alt_ctg12_2_3
zC178F18
EPN details
CT030183.9
finished
12 DKEY-33G13
alt_ctg12_2_3
zK33G13
EPN details
CT573006.10
finished
  GAP (type-3) length unknown    
14 CH211-248J19
alt_ctg12_2_4
CONTAINER
zC248J19
EPN details
BX255898.9
finished
15 CH211-242D13
alt_ctg12_2_4
CONTAINED
zC242D13
EPN details
BX323027.8
finished
14 CH211-248J19
alt_ctg12_2_4
CONTAINER
zC248J19
EPN details
BX255898.9
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 69812 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 CU914479.8 1 69812 +
69813 287903 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 CR354584.8 1 218091 +
287904 369612 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 CR352235.8 2001 83709 +
369613 558153 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 BX323878.10 2001 190541 +
558154 752006 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 BX649366.5 1 193853 -
752007 802006 6 N 50000 contig no
802007 968621 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 8 BX927102.12 1 166615 +
968622 980528 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 8 CU459175.7 25593 37499 +
980529 1030528 9 N 50000 contig no
1030529 1151459 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 12 BX248086.8 52742 173672 -
1151460 1211138 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 12 CT030183.9 1 59679 +
1211139 1381336 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 12 CT573006.10 5642 175839 +
1381337 1431336 13 N 50000 contig no
1431337 1456378 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 16 BX255898.9 156871 181912 -
1456379 1595635 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 16 BX323027.8 1 139257 +
1595636 1613926 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 16 BX255898.9 1 18291 -

Details

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# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH211-120D1
alt_ctg12_2_1
zC120D1
-
-
CU914479.8
finished
160074 CHORI-211 3' / 5'
69812 / 1
- / -
90262
0
Identified
2017-03-07
agp2oracle
humpub
 
2 DKEY-7B6
alt_ctg12_2_1
zK7B6
-
-
CR354584.8
finished
218091 DanioKey 3' / 5'
218091 / 2001
- / -
2000
0
Identified
2005-10-07
find_overl...
badger
 
3 DKEY-14A21
alt_ctg12_2_1
zK14A21
-
-
CR352235.8
finished
83709 DanioKey 3' / 5'
83709 / 2001
- / -
2000
0
Identified
2005-08-19
find_overl...
badger
 
4 CH211-57E23
alt_ctg12_2_1
zC57E23
-
-
BX323878.10
finished
190541 CHORI-211 3' / 3'
190541 / 193853
- / -
28457
0
Identified
2017-03-07
agp2oracle
humpub
 
5 DKEY-16I5
alt_ctg12_2_1
zK16I5
-
-
BX649366.5
finished
222310 DanioKey        
  GAP (type-3) length unknown                  
7 CH211-139C17
alt_ctg12_2_2
zC139C17
-
-
BX927102.12
finished
166615 CHORI-211 3' / 5'
166615 / 25593
- / -
25592
0
Identified
2017-03-07
agp2oracle
humpub
 
8 CH73-122J5
alt_ctg12_2_2
zH122J5
-
-
CU459175.7
finished
37499 CHORI-73        
  GAP (type-3) length unknown                  
10 CH211-277E21
alt_ctg12_2_3
zC277E21
-
-
BX248086.8
finished
173672 CHORI-211 5' / 5'
52742 / 1
- / -
52741
0
Identified
2017-03-07
agp2oracle
humpub
 
11 CH211-178F18
alt_ctg12_2_3
zC178F18
-
-
CT030183.9
finished
59679 CHORI-211 3' / 5'
59679 / 5642
- / -
5641
0
Identified
2017-03-07
agp2oracle
humpub
 
12 DKEY-33G13
alt_ctg12_2_3
zK33G13
-
-
CT573006.10
finished
175839 DanioKey        
  GAP (type-3) length unknown                  
14 CH211-248J19
alt_ctg12_2_4
CONTAINER
zC248J19
-
-
BX255898.9
finished
181912 CHORI-211 5' / 5'
156871 / 1
- / -
139257
0
Identified
2017-03-31
agp2oracle
humpub
 
15 CH211-242D13
alt_ctg12_2_4
CONTAINED
zC242D13
-
-
BX323027.8
finished
139257 CHORI-211 3' / 3'
139257 / 18291
- / -
139257
0
Identified
2017-03-31
agp2oracle
humpub
 
14 CH211-248J19
alt_ctg12_2_4
CONTAINER
zC248J19
-
-
BX255898.9
finished
181912 CHORI-211        

Statistics

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Clone Summary

Number of gaps
3
Gap types
type-3
3
Total clones
12
Clone HTGS Phases
finished
12
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
370,314
Total finished length of fin clones w/ overlap
1,809,198
Total finished length of fin clones w/o overlap
1,438,884
Total overlap length of fin+unfin clones
370,314
Total finished length of fin+unfin clones w/ overlap
1,809,198
Total finished length of fin+unfin clones w/o overlap
1,438,884

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