ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_1__23 (TPF updated: 2018-01-16)

TPF

Help

# Clone ext/Contig Clone int Acc/Fin
1 CH73-268E11
alt_ctg23_1_1
zH268E11
EPN details
CU137717.8
finished
2 DKEY-22L9
alt_ctg23_1_1
zK22L9
EPN details
CR388032.9
finished
3 DKEY-14P11
alt_ctg23_1_1
zK14P11
EPN details
BX470099.5
finished
  GAP (type-3) length unknown    
5 CH211-188C24
alt_ctg23_1_2
zC188C24
EPN details
CR352294.8
finished
6 CH211-214J4
alt_ctg23_1_2
zC214J4
EPN details
BX119982.8
finished
7 CH211-133J6
alt_ctg23_1_2
zC133J6
EPN details
CR450756.4
finished
  GAP (type-3) length unknown    
9 CH211-117I13
alt_ctg23_1_3
zC117I13
EPN details
BX511107.3
finished
10 DKEY-98H23
alt_ctg23_1_3
zK98H23
EPN details
BX470267.5
finished
11 DKEY-211A8
alt_ctg23_1_3
zK211A8
EPN details
BX323028.6
finished
  GAP (type-3) length unknown    
13 CH211-153A8
alt_ctg23_1_4
zC153A8
EPN details
AL928967.9
finished
14 CH211-130M12
alt_ctg23_1_4
zC130M12
EPN details
BX005002.9
finished
15 CH73-338L23
alt_ctg23_1_4
zH338L23
EPN details
CU896643.5
finished
  GAP (type-3) length unknown    
17
alt_ctg23_1_5
CABZ01031609
CABZ01031609.1
finished
18 RP71-7A17
alt_ctg23_1_5
bZ7A17
EPN details
BX546488.10
finished
19
alt_ctg23_1_5
CABZ01031614
CABZ01031614.1
finished
  GAP (type-3) length unknown    
21 DKEY-15L19
alt_ctg23_1_6
zK15L19
EPN details
BX546500.7
finished
22 DKEY-13O11
alt_ctg23_1_6
zK13O11
EPN details
BX004853.7
finished
23 CH211-278F9
alt_ctg23_1_6
zC278F9
EPN details
CR450832.12
finished
  GAP (type-3) length unknown    
25 DKEY-248E12
alt_ctg23_1_7
zK248E12
EPN details
CR749171.10
finished
26 CH211-46H12
alt_ctg23_1_7
Cl/Pr zC46H12/zC42I6 swap
EPN details
BX469903.9
finished
27 DKEY-256K13
alt_ctg23_1_7
zK256K13
EPN details
CR391935.9
finished
  GAP (type-3) length unknown    
29 CH73-348F15
alt_ctg23_1_8
zH348F15
EPN details
CU929459.5
finished
30 DKEY-193P22
alt_ctg23_1_8
zK193P22
EPN details
CR774178.17
finished
31 DKEY-90A13
alt_ctg23_1_8
zK90A13
EPN details
BX897727.17
finished
  GAP (type-3) length unknown    
33 DKEY-207A6
alt_ctg23_1_9
zK207A6
EPN details
CR936261.8
finished
34 CH211-197C5
alt_ctg23_1_9
zC197C5
EPN details
CR376775.7
finished
35 DKEY-12E8
alt_ctg23_1_9
zK12E8
EPN details
CR354537.14
finished
  GAP (type-3) length unknown    
37 RP71-79P20
alt_ctg23_1_10
bZ79P20
EPN details
AL590155.9
finished
38 DKEY-11H11
alt_ctg23_1_10
zK11H11
EPN details
AL954725.9
finished
39 CH211-39F23
alt_ctg23_1_10
zC39F23
EPN details
BX465185.8
finished
40 DKEY-3A9
alt_ctg23_1_10
zK3A9
EPN details
CT573338.17
finished
  GAP (type-3) length unknown    
42 CH211-218G4
alt_ctg23_1_11
zC218G4
EPN details
CR352242.13
finished
43 CH211-212E24
alt_ctg23_1_11
zC212E24
EPN details
AL928728.9
finished
44 CH211-279A13
alt_ctg23_1_11
zC279A13
EPN details
BX322531.7
finished
45 DKEYP-19H2
alt_ctg23_1_11
zKp19H2
EPN details
CR854837.11
finished
  GAP (type-3) length unknown    
47 CH73-114C19
alt_ctg23_1_12
Cl/Pr zH114C19/zK152A11 swap
EPN details
CU468228.2
finished
48 CH211-209L14
alt_ctg23_1_12
zC209L14
EPN details
BX247945.6
finished
49 CH211-132N11
alt_ctg23_1_12
zC132N11
EPN details
BX005185.5
finished
50 DKEY-103A3
alt_ctg23_1_12
zK103A3
EPN details
BX511184.11
finished
  GAP (type-3) length unknown    
52 DKEYP-115F6
alt_ctg23_1_13
zKp115F6
EPN details
CU041345.13
finished
53 CH211-157B19
alt_ctg23_1_13
zC157B19
EPN details
AL929522.11
finished
54 CH211-224L10
alt_ctg23_1_13
zC224L10
EPN details
BX296551.4
finished
  GAP (type-3) length unknown    
56 DKEY-147F3
alt_ctg23_1_14
zK147F3
EPN details
CR356239.11
finished
57 CH211-189L6
alt_ctg23_1_14
zC189L6
EPN details
AL929578.4
finished
58 DKEY-108P14
alt_ctg23_1_14
zK108P14
EPN details
BX927275.8
finished
  GAP (type-3) length unknown    
60 DKEY-109J17
alt_ctg23_1_15
zK109J17
EPN details
CR388168.14
finished
61 CH211-175P10
alt_ctg23_1_15
zC175P10
EPN details
CR628407.6
finished
62 DKEY-208D13
alt_ctg23_1_15
zK208D13
EPN details
BX649301.3
finished
63 CH73-289A15
alt_ctg23_1_15
zH289A15
EPN details
CT573385.8
finished
  GAP (type-3) length unknown    
65 DKEY-93L1
alt_ctg23_1_16
zK93L1
EPN details
CR352234.11
finished
66 CH211-133L21
alt_ctg23_1_16
zC133L21
EPN details
BX323873.9
finished
67 DKEYP-1G12
alt_ctg23_1_16
zKp1G12
EPN details
BX323050.6
finished
  GAP (type-3) length unknown    
69 RP71-17I16
alt_ctg23_1_17
bZ17I16
EPN details
CR749762.6
finished
70 DKEYP-97F4
alt_ctg23_1_17
zKp97F4
EPN details
CR318627.19
finished
71 CH211-104F13
alt_ctg23_1_17
zC104F13
EPN details
CR352228.11
finished
  GAP (type-3) length unknown    
73 DKEY-25B23
alt_ctg23_1_18
zK25B23
EPN details
CR354562.12
finished
74 DKEY-28B17
alt_ctg23_1_18
zK28B17
EPN details
BX004787.8
finished
75 DKEY-7C22
alt_ctg23_1_18
zK7C22
EPN details
CT027552.11
finished
  GAP (type-3) length unknown    
77 DKEY-1C11
alt_ctg23_1_19
zK1C11
EPN details
CR847529.10
finished
78 DKEY-12I13
alt_ctg23_1_19
zK12I13
EPN details
BX005199.10
finished
79 CH211-158G13
alt_ctg23_1_19
zC158G13
EPN details
AL929508.6
finished
80 DKEY-68L7
alt_ctg23_1_19
zK68L7
EPN details
BX005235.9
finished
  GAP (type-3) length unknown    
82 DKEY-237G3
alt_ctg23_1_20
zK237G3
EPN details
CT027629.6
finished
83 DKEY-220G10
alt_ctg23_1_20
zK220G10
EPN details
BX548008.7
finished
84 CH211-28E16
alt_ctg23_1_20
zC28E16
EPN details
CR388207.13
finished
  GAP (type-3) length unknown    
86 CH73-7K20
alt_ctg23_1_21
zH7K20
EPN details
CT573317.6
finished
87 CH211-262O24
alt_ctg23_1_21
zC262O24
EPN details
BX294392.3
finished
88 CH211-273O6
alt_ctg23_1_21
zC273O6
EPN details
AL929188.6
finished
  GAP (type-3) length unknown    
90 DKEY-98J1
alt_ctg23_1_22
zK98J1
EPN details
AL845437.14
finished
91 DKEY-283B10
alt_ctg23_1_22
zK283B10
EPN details
CR352239.11
finished
92 DKEY-27M6
alt_ctg23_1_22
zK27M6
EPN details
CR751236.6
finished
  GAP (type-3) length unknown    
94 CH211-135H16
alt_ctg23_1_23
zC135H16
EPN details
CR339058.11
finished
95 CH211-11F6
alt_ctg23_1_23
zC11F6
EPN details
BX548074.9
finished
96 CH73-313G1
alt_ctg23_1_23
zH313G1
EPN details
CU459156.8
finished
  GAP (type-3) length unknown    
98 CH73-233L1
alt_ctg23_1_24
zH233L1
EPN details
CU062415.7
finished
99 DKEY-101O12
alt_ctg23_1_24
zK101O12
EPN details
BX323989.4
finished
100 CH211-203J19
alt_ctg23_1_24
zC203J19
EPN details
CR450795.8
finished
  GAP (type-3) length unknown    
102 CH1073-432F14
alt_ctg23_1_25
zFD432F14
EPN details
FO704613.2
finished
103 CH211-201A8
alt_ctg23_1_25
zC201A8
EPN details
BX928749.12
finished
104 DKEY-31B16
alt_ctg23_1_25
zK31B16
EPN details
BX957326.8
finished
  GAP (type-3) length unknown    
106 CH211-39F16
alt_ctg23_1_26
zC39F16
EPN details
CU041388.6
finished
107 DKEY-151G10
alt_ctg23_1_26
zK151G10
EPN details
CR382340.7
finished
  GAP (type-3) length unknown    
109 DKEY-21C19
alt_ctg23_1_27
zK21C19
EPN details
BX005414.13
finished
110 DKEY-97G16
alt_ctg23_1_27
zK97G16
EPN details
BX005387.7
finished
111 DKEY-24L7
alt_ctg23_1_27
zK24L7
EPN details
CR318614.7
finished
  GAP (type-3) length unknown    
113 CH211-190A18
alt_ctg23_1_28
zC190A18
EPN details
CR774183.10
finished
114 DKEY-3P10
alt_ctg23_1_28
zK3P10
EPN details
CR361559.12
finished
115 DKEY-157G16
alt_ctg23_1_28
zK157G16
EPN details
CR354433.25
finished
  GAP (type-3) length unknown    
117 DKEY-228G21
alt_ctg23_1_29
zK228G21
EPN details
BX663515.13
finished
118 DKEY-27C4
alt_ctg23_1_29
zK27C4
EPN details
BX571968.10
finished
119 DKEY-115O4
alt_ctg23_1_29
zK115O4
EPN details
CR381567.9
finished
120 DKEY-242A8
alt_ctg23_1_29
zK242A8
EPN details
BX664745.13
finished
  GAP (type-3) length unknown    
122 CH211-189F14
alt_ctg23_1_30
zC189F14
EPN details
CR356221.6
finished
123 DKEYP-116B6
alt_ctg23_1_30
zKp116B6
EPN details
BX957303.8
finished
124 CH211-129O18
alt_ctg23_1_30
zC129O18
EPN details
CR381616.9
finished
  GAP (type-3) length unknown    
126 DKEY-223I19
alt_ctg23_1_31
zK223I19
EPN details
BX663608.26
finished
127 CH211-74M19
alt_ctg23_1_31
zC74M19
EPN details
BX928757.9
finished
128 CH211-67F18
alt_ctg23_1_31
zC67F18
EPN details
CR293528.7
finished
  GAP (type-3) length unknown    
130 DKEYP-78A6
alt_ctg23_1_32
zKp78A6
EPN details
CR753893.6
finished
131 DKEYP-95E3
alt_ctg23_1_32
zKp95E3
EPN details
AL929139.7
finished
132 DKEY-105A6
alt_ctg23_1_32
zK105A6
EPN details
AL845422.6
finished
133 DKEY-202M22
alt_ctg23_1_32
zK202M22
EPN details
AL845357.6
finished
  GAP (type-3) length unknown    
135 DKEY-261L7
alt_ctg23_1_33
zK261L7
EPN details
CR759802.10
finished
136 CH211-209B6
alt_ctg23_1_33
zC209B6
EPN details
BX322566.6
finished
137 DKEYP-79F12
alt_ctg23_1_33
CONTAINER
zKp79F12
EPN details
CR759830.8
finished
138 DKEY-266K15
alt_ctg23_1_33
CONTAINED
zK266K15
EPN details
BX530074.13
finished
137 DKEYP-79F12
alt_ctg23_1_33
CONTAINER
zKp79F12
EPN details
CR759830.8
finished
  GAP (type-3) length unknown    
140 DKEY-161P7
alt_ctg23_1_34
CONTAINER
zK161P7
EPN details
BX927365.7
finished
141 CH211-12E7
alt_ctg23_1_34
CONTAINED
zC12E7
EPN details
BX323831.7
finished
140 DKEY-161P7
alt_ctg23_1_34
CONTAINER
zK161P7
EPN details
BX927365.7
finished
  GAP (type-3) length unknown    
143 DKEY-197C14
alt_ctg23_1_35
zK197C14
EPN details
CU469363.8
finished
144 CH211-229G3
alt_ctg23_1_35
zC229G3
EPN details
AL807377.10
finished
145 CH211-240A8
alt_ctg23_1_35
zC240A8
EPN details
BX119991.17
finished
146 CH211-66I15
alt_ctg23_1_35
zC66I15
EPN details
BX957355.14
finished
  GAP (type-3) length unknown    
148 CH211-222C18
alt_ctg23_1_36
zC222C18
EPN details
BX322662.12
finished
149
alt_ctg23_1_36
CABZ01049768
CABZ01049768.1
finished
  GAP (type-3) length unknown    
151 CH73-269M23
alt_ctg23_1_37
zH269M23
EPN details
CU682777.6
finished
152 DKEY-232A10
alt_ctg23_1_37
zK232A10
EPN details
BX510651.9
finished
153 CH73-361H17
alt_ctg23_1_37
zH361H17
EPN details
CU682622.9
finished

AGP

Help

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 78069 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CU137717.8 1 78069 +
78070 349823 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CR388032.9 1 271754 -
349824 367380 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX470099.5 182275 199831 +
367381 417380 4 N 50000 contig no
417381 436711 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CR352294.8 1 19331 +
436712 647413 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX119982.8 1 210702 +
647414 689046 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CR450756.4 89513 131145 +
689047 739046 8 N 50000 contig no
739047 810922 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 BX511107.3 1 71876 +
810923 984117 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 BX470267.5 1 173195 +
984118 992563 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 BX323028.6 88983 97428 +
992564 1042563 12 N 50000 contig no
1042564 1113082 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 AL928967.9 115969 186487 -
1113083 1282293 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 BX005002.9 1 169211 -
1282294 1325015 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 CU896643.5 47334 90055 +
1325016 1375015 16 N 50000 contig no
1375016 1399194 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 CABZ01031609.1 1 24179 +
1399195 1443090 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 BX546488.10 1 43896 +
1443091 1478468 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 CABZ01031614.1 1 35378 +
1478469 1528468 20 N 50000 contig no
1528469 1677173 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 BX546500.7 88742 237446 -
1677174 1859699 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 BX004853.7 1 182526 +
1859700 2000636 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 CR450832.12 1 140937 -
2000637 2050636 24 N 50000 contig no
2050637 2078653 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 27 CR749171.10 23282 51298 -
2078654 2250221 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 27 BX469903.9 4180 175747 +
2250222 2307561 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 27 CR391935.9 139852 197191 +
2307562 2357561 28 N 50000 contig no
2357562 2383127 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 31 CU929459.5 1 25566 +
2383128 2585645 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 31 CR774178.17 1 202518 -
2585646 2685312 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 31 BX897727.17 1 99667 -
2685313 2735312 32 N 50000 contig no
2735313 2774623 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 35 CR936261.8 67368 106678 -
2774624 2971469 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 35 CR376775.7 1 196846 -
2971470 3019796 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 35 CR354537.14 1 48327 -
3019797 3069796 36 N 50000 contig no
3069797 3082198 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 40 AL590155.9 1 12402 +
3082199 3302169 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 40 AL954725.9 1 219971 +
3302170 3448250 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 40 BX465185.8 610 146690 -
3448251 3523305 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 40 CT573338.17 1 75055 -
3523306 3573305 41 N 50000 contig no
3573306 3642643 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 45 CR352242.13 54166 123503 -
3642644 3849156 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 45 AL928728.9 1 206513 -
3849157 3950320 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 45 BX322531.7 1 101164 -
3950321 3962949 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 45 CR854837.11 1 12629 -
3962950 4012949 46 N 50000 contig no
4012950 4016784 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 50 CU468228.2 22088 25922 -
4016785 4216129 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 50 BX247945.6 1 199345 +
4216130 4323477 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 50 BX005185.5 57174 164521 +
4323478 4408153 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 50 BX511184.11 125060 209735 +
4408154 4458153 51 N 50000 contig no
4458154 4495613 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 54 CU041345.13 1 37460 +
4495614 4660732 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 54 AL929522.11 1 165119 -
4660733 4791779 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 54 BX296551.4 49401 180447 +
4791780 4841779 55 N 50000 contig no
4841780 4886164 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 58 CR356239.11 1 44385 +
4886165 5023849 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 58 AL929578.4 4883 142567 +
5023850 5151756 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 58 BX927275.8 6006 133912 +
5151757 5201756 59 N 50000 contig no
5201757 5324013 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 60 - 63 CR388168.14 1 122257 +
5324014 5423323 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 60 - 63 CR628407.6 1 99310 +
5423324 5570790 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 60 - 63 BX649301.3 1 147467 -
5570791 5599110 63 FClick to retrieve finished assembled sequence in green bar: rank(s) 60 - 63 CT573385.8 46288 74607 +
5599111 5649110 64 N 50000 contig no
5649111 5779503 65 FClick to retrieve finished assembled sequence in green bar: rank(s) 65 - 67 CR352234.11 1 130393 +
5779504 5966211 66 FClick to retrieve finished assembled sequence in green bar: rank(s) 65 - 67 BX323873.9 1 186708 -
5966212 6016555 67 FClick to retrieve finished assembled sequence in green bar: rank(s) 65 - 67 BX323050.6 1 50344 -
6016556 6066555 68 N 50000 contig no
6066556 6235392 69 FClick to retrieve finished assembled sequence in green bar: rank(s) 69 - 71 CR749762.6 1 168837 +
6235393 6411523 70 FClick to retrieve finished assembled sequence in green bar: rank(s) 69 - 71 CR318627.19 1 176131 -
6411524 6425663 71 FClick to retrieve finished assembled sequence in green bar: rank(s) 69 - 71 CR352228.11 1 14140 -
6425664 6475663 72 N 50000 contig no
6475664 6613888 73 FClick to retrieve finished assembled sequence in green bar: rank(s) 73 - 75 CR354562.12 63540 201764 -
6613889 6811924 74 FClick to retrieve finished assembled sequence in green bar: rank(s) 73 - 75 BX004787.8 1 198036 -
6811925 6959939 75 FClick to retrieve finished assembled sequence in green bar: rank(s) 73 - 75 CT027552.11 1 148015 -
6959940 7009939 76 N 50000 contig no
7009940 7141353 77 FClick to retrieve finished assembled sequence in green bar: rank(s) 77 - 80 CR847529.10 1 131414 +
7141354 7260466 78 FClick to retrieve finished assembled sequence in green bar: rank(s) 77 - 80 BX005199.10 1 119113 +
7260467 7438495 79 FClick to retrieve finished assembled sequence in green bar: rank(s) 77 - 80 AL929508.6 2001 180029 +
7438496 7533398 80 FClick to retrieve finished assembled sequence in green bar: rank(s) 77 - 80 BX005235.9 1 94903 -
7533399 7583398 81 N 50000 contig no
7583399 7636716 82 FClick to retrieve finished assembled sequence in green bar: rank(s) 82 - 84 CT027629.6 1 53318 +
7636717 7822962 83 FClick to retrieve finished assembled sequence in green bar: rank(s) 82 - 84 BX548008.7 1 186246 +
7822963 7897602 84 FClick to retrieve finished assembled sequence in green bar: rank(s) 82 - 84 CR388207.13 117199 191838 +
7897603 7947602 85 N 50000 contig no
7947603 7951222 86 FClick to retrieve finished assembled sequence in green bar: rank(s) 86 - 88 CT573317.6 1 3620 +
7951223 8085607 87 FClick to retrieve finished assembled sequence in green bar: rank(s) 86 - 88 BX294392.3 1 134385 -
8085608 8115217 88 FClick to retrieve finished assembled sequence in green bar: rank(s) 86 - 88 AL929188.6 1 29610 -
8115218 8165217 89 N 50000 contig no
8165218 8330493 90 FClick to retrieve finished assembled sequence in green bar: rank(s) 90 - 92 AL845437.14 73809 239084 -
8330494 8490015 91 FClick to retrieve finished assembled sequence in green bar: rank(s) 90 - 92 CR352239.11 1 159522 +
8490016 8520765 92 FClick to retrieve finished assembled sequence in green bar: rank(s) 90 - 92 CR751236.6 1 30750 -
8520766 8570765 93 N 50000 contig no
8570766 8578599 94 FClick to retrieve finished assembled sequence in green bar: rank(s) 94 - 96 CR339058.11 103024 110857 -
8578600 8740204 95 FClick to retrieve finished assembled sequence in green bar: rank(s) 94 - 96 BX548074.9 3863 165467 -
8740205 8777295 96 FClick to retrieve finished assembled sequence in green bar: rank(s) 94 - 96 CU459156.8 48378 85468 +
8777296 8827295 97 N 50000 contig no
8827296 8921949 98 FClick to retrieve finished assembled sequence in green bar: rank(s) 98 - 100 CU062415.7 1 94654 +
8921950 9120314 99 FClick to retrieve finished assembled sequence in green bar: rank(s) 98 - 100 BX323989.4 1 198365 -
9120315 9146003 100 FClick to retrieve finished assembled sequence in green bar: rank(s) 98 - 100 CR450795.8 136542 162230 +
9146004 9196003 101 N 50000 contig no
9196004 9210467 102 FClick to retrieve finished assembled sequence in green bar: rank(s) 102 - 104 FO704613.2 1 14464 +
9210468 9425730 103 FClick to retrieve finished assembled sequence in green bar: rank(s) 102 - 104 BX928749.12 1 215263 +
9425731 9537129 104 FClick to retrieve finished assembled sequence in green bar: rank(s) 102 - 104 BX957326.8 147694 259092 +
9537130 9587129 105 N 50000 contig no
9587130 9792915 106 FClick to retrieve finished assembled sequence in green bar: rank(s) 106 - 107 CU041388.6 1 205786 -
9792916 9820782 107 FClick to retrieve finished assembled sequence in green bar: rank(s) 106 - 107 CR382340.7 1 27867 -
9820783 9870782 108 N 50000 contig no
9870783 10007358 109 FClick to retrieve finished assembled sequence in green bar: rank(s) 109 - 111 BX005414.13 1 136576 +
10007359 10159975 110 FClick to retrieve finished assembled sequence in green bar: rank(s) 109 - 111 BX005387.7 1 152617 +
10159976 10182556 111 FClick to retrieve finished assembled sequence in green bar: rank(s) 109 - 111 CR318614.7 56891 79471 +
10182557 10232556 112 N 50000 contig no
10232557 10347570 113 FClick to retrieve finished assembled sequence in green bar: rank(s) 113 - 115 CR774183.10 1 115014 +
10347571 10593611 114 FClick to retrieve finished assembled sequence in green bar: rank(s) 113 - 115 CR361559.12 1 246041 +
10593612 10696455 115 FClick to retrieve finished assembled sequence in green bar: rank(s) 113 - 115 CR354433.25 1 102844 -
10696456 10746455 116 N 50000 contig no
10746456 10814732 117 FClick to retrieve finished assembled sequence in green bar: rank(s) 117 - 120 BX663515.13 155939 224215 -
10814733 11040108 118 FClick to retrieve finished assembled sequence in green bar: rank(s) 117 - 120 BX571968.10 1 225376 -
11040109 11180523 119 FClick to retrieve finished assembled sequence in green bar: rank(s) 117 - 120 CR381567.9 3 140417 -
11180524 11387112 120 FClick to retrieve finished assembled sequence in green bar: rank(s) 117 - 120 BX664745.13 1 206589 -
11387113 11437112 121 N 50000 contig no
11437113 11447404 122 FClick to retrieve finished assembled sequence in green bar: rank(s) 122 - 124 CR356221.6 44332 54623 -
11447405 11557936 123 FClick to retrieve finished assembled sequence in green bar: rank(s) 122 - 124 BX957303.8 1 110532 -
11557937 11572755 124 FClick to retrieve finished assembled sequence in green bar: rank(s) 122 - 124 CR381616.9 74211 89029 +
11572756 11622755 125 N 50000 contig no
11622756 11725537 126 FClick to retrieve finished assembled sequence in green bar: rank(s) 126 - 128 BX663608.26 87747 190528 -
11725538 11877692 127 FClick to retrieve finished assembled sequence in green bar: rank(s) 126 - 128 BX928757.9 1 152155 +
11877693 11933151 128 FClick to retrieve finished assembled sequence in green bar: rank(s) 126 - 128 CR293528.7 47239 102697 +
11933152 11983151 129 N 50000 contig no
11983152 12144499 130 FClick to retrieve finished assembled sequence in green bar: rank(s) 130 - 133 CR753893.6 1 161348 +
12144500 12214804 131 FClick to retrieve finished assembled sequence in green bar: rank(s) 130 - 133 AL929139.7 3 70307 +
12214805 12433940 132 FClick to retrieve finished assembled sequence in green bar: rank(s) 130 - 133 AL845422.6 2001 221136 +
12433941 12648513 133 FClick to retrieve finished assembled sequence in green bar: rank(s) 130 - 133 AL845357.6 6440 221012 +
12648514 12698513 134 N 50000 contig no
12698514 12796013 135 FClick to retrieve finished assembled sequence in green bar: rank(s) 135 - 139 CR759802.10 1 97500 +
12796014 12999140 136 FClick to retrieve finished assembled sequence in green bar: rank(s) 135 - 139 BX322566.6 1 203127 -
12999141 13000816 137 FClick to retrieve finished assembled sequence in green bar: rank(s) 135 - 139 CR759830.8 65861 67536 +
13000817 13124886 138 FClick to retrieve finished assembled sequence in green bar: rank(s) 135 - 139 BX530074.13 1 124070 -
13124887 13140250 139 FClick to retrieve finished assembled sequence in green bar: rank(s) 135 - 139 CR759830.8 180670 196033 +
13140251 13190250 140 N 50000 contig no
13190251 13201399 141 FClick to retrieve finished assembled sequence in green bar: rank(s) 141 - 143 BX927365.7 1 11149 +
13201400 13382037 142 FClick to retrieve finished assembled sequence in green bar: rank(s) 141 - 143 BX323831.7 1 180638 -
13382038 13416379 143 FClick to retrieve finished assembled sequence in green bar: rank(s) 141 - 143 BX927365.7 195267 229608 +
13416380 13466379 144 N 50000 contig no
13466380 13516097 145 FClick to retrieve finished assembled sequence in green bar: rank(s) 145 - 148 CU469363.8 1 49718 +
13516098 13686328 146 FClick to retrieve finished assembled sequence in green bar: rank(s) 145 - 148 AL807377.10 1 170231 +
13686329 13785676 147 FClick to retrieve finished assembled sequence in green bar: rank(s) 145 - 148 BX119991.17 2001 101348 +
13785677 13855980 148 FClick to retrieve finished assembled sequence in green bar: rank(s) 145 - 148 BX957355.14 85278 155581 +
13855981 13905980 149 N 50000 contig no
13905981 14115389 150 FClick to retrieve finished assembled sequence in green bar: rank(s) 150 - 151 BX322662.12 1 209409 -
14115390 14134999 151 FClick to retrieve finished assembled sequence in green bar: rank(s) 150 - 151 CABZ01049768.1 42226 61835 +
14135000 14184999 152 N 50000 contig no
14185000 14245274 153 FClick to retrieve finished assembled sequence in green bar: rank(s) 153 - 155 CU682777.6 24559 84833 -
14245275 14294128 154 FClick to retrieve finished assembled sequence in green bar: rank(s) 153 - 155 BX510651.9 26083 74936 -
14294129 14336298 155 FClick to retrieve finished assembled sequence in green bar: rank(s) 153 - 155 CU682622.9 1 42170 -

Details

Help

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH73-268E11
alt_ctg23_1_1
zH268E11
-
-
CU137717.8
finished
80069 CHORI-73 3' / 3'
78069 / 271754
- / -
2000
0
Identified
2017-03-07
agp2oracle
humpub
 
2 DKEY-22L9
alt_ctg23_1_1
zK22L9
-
-
CR388032.9
finished
271754 DanioKey 5' / 5'
1 / 182275
- / -
182274
0
Identified
2017-03-07
agp2oracle
humpub
 
3 DKEY-14P11
alt_ctg23_1_1
zK14P11
-
-
BX470099.5
finished
199831 DanioKey        
  GAP (type-3) length unknown                  
5 CH211-188C24
alt_ctg23_1_2
zC188C24
-
-
CR352294.8
finished
142161 CHORI-211 3' / 5'
19331 / 1
- / -
122830
0
Identified
2017-03-07
agp2oracle
humpub
 
6 CH211-214J4
alt_ctg23_1_2
zC214J4
-
-
BX119982.8
finished
210702 CHORI-211 3' / 5'
210702 / 89513
- / -
89512
0
Identified
2017-03-07
agp2oracle
humpub
 
7 CH211-133J6
alt_ctg23_1_2
zC133J6
-
-
CR450756.4
finished
131145 CHORI-211        
  GAP (type-3) length unknown                  
9 CH211-117I13
alt_ctg23_1_3
zC117I13
-
-
BX511107.3
finished
165497 CHORI-211 3' / 5'
71876 / 1
- / -
93621
0
Identified
2017-03-07
agp2oracle
humpub
 
10 DKEY-98H23
alt_ctg23_1_3
zK98H23
-
-
BX470267.5
finished
182303 DanioKey 3' / 5'
173195 / 88983
- / -
98090
0
Identified
2017-03-07
agp2oracle
humpub
 
11 DKEY-211A8
alt_ctg23_1_3
zK211A8
-
-
BX323028.6
finished
97428 DanioKey        
  GAP (type-3) length unknown                  
13 CH211-153A8
alt_ctg23_1_4
zC153A8
-
-
AL928967.9
finished
186487 CHORI-211 5' / 3'
115969 / 169211
- / -
117031
0
Identified
2017-03-07
agp2oracle
humpub
 
14 CH211-130M12
alt_ctg23_1_4
zC130M12
-
-
BX005002.9
finished
170274 CHORI-211 5' / 5'
1 / 47334
- / -
47333
0
Identified
2017-03-07
agp2oracle
humpub
 
15 CH73-338L23
alt_ctg23_1_4
zH338L23
-
-
CU896643.5
finished
90055 CHORI-73        
  GAP (type-3) length unknown                  
17
alt_ctg23_1_5
CABZ01031609
-
-
CABZ01031609.1
finished
29211 - 3' / 5'
24179 / 1
- / -
5032
0
Identified
2017-03-07
agp2oracle
humpub
 
18 RP71-7A17
alt_ctg23_1_5
bZ7A17
-
-
BX546488.10
finished
102324 RPCI-71 3' / 5'
43896 / 1
- / -
58428
0
Identified
2017-03-07
agp2oracle
humpub
 
19
alt_ctg23_1_5
CABZ01031614
-
-
CABZ01031614.1
finished
35378 -        
  GAP (type-3) length unknown                  
21 DKEY-15L19
alt_ctg23_1_6
zK15L19
-
-
BX546500.7
finished
237446 DanioKey 5' / 5'
88742 / 1
- / -
88741
0
Identified
2017-03-07
agp2oracle
humpub
 
22 DKEY-13O11
alt_ctg23_1_6
zK13O11
-
-
BX004853.7
finished
182526 DanioKey 3' / 3'
182526 / 140937
- / -
20330
0
Identified
2017-03-07
agp2oracle
humpub
 
23 CH211-278F9
alt_ctg23_1_6
zC278F9
-
-
CR450832.12
finished
161267 CHORI-211        
  GAP (type-3) length unknown                  
25 DKEY-248E12
alt_ctg23_1_7
zK248E12
-
-
CR749171.10
finished
51298 DanioKey 5' / 5'
23282 / 4180
- / -
27460
0
Identified
2017-03-07
agp2oracle
humpub
 
26 CH211-46H12
alt_ctg23_1_7
zC46H12
-
-
BX469903.9
finished
175747 CHORI-211 3' / 5'
175747 / 139852
- / -
139851
0
Identified
2017-03-07
agp2oracle
humpub
 
27 DKEY-256K13
alt_ctg23_1_7
zK256K13
-
-
CR391935.9
finished
197191 DanioKey        
  GAP (type-3) length unknown                  
29 CH73-348F15
alt_ctg23_1_8
zH348F15
-
-
CU929459.5
finished
55177 CHORI-73 3' / 3'
25566 / 202518
- / -
29611
0
Identified
2017-03-07
agp2oracle
humpub
 
30 DKEY-193P22
alt_ctg23_1_8
zK193P22
-
-
CR774178.17
finished
202518 DanioKey 5' / 3'
1 / 99667
- / -
136610
0
Identified
2017-03-07
agp2oracle
humpub
 
31 DKEY-90A13
alt_ctg23_1_8
zK90A13
-
-
BX897727.17
finished
236277 DanioKey        
  GAP (type-3) length unknown                  
33 DKEY-207A6
alt_ctg23_1_9
zK207A6
-
-
CR936261.8
finished
106678 DanioKey 5' / 3'
67368 / 196846
- / -
67367
0
Identified
2017-03-07
agp2oracle
humpub
 
34 CH211-197C5
alt_ctg23_1_9
zC197C5
-
-
CR376775.7
finished
196846 CHORI-211 5' / 3'
1 / 48327
- / -
52834
0
Identified
2017-03-07
agp2oracle
humpub
 
35 DKEY-12E8
alt_ctg23_1_9
zK12E8
-
-
CR354537.14
finished
101161 DanioKey        
  GAP (type-3) length unknown                  
37 RP71-79P20
alt_ctg23_1_10
bZ79P20
-
-
AL590155.9
finished
161731 RPCI-71 3' / 5'
12402 / 1
- / -
149329
0
Identified
2017-03-07
agp2oracle
humpub
 
38 DKEY-11H11
alt_ctg23_1_10
zK11H11
-
-
AL954725.9
finished
219971 DanioKey 3' / 3'
219971 / 146690
- / -
2000
0
Identified
2017-03-07
agp2oracle
humpub
 
39 CH211-39F23
alt_ctg23_1_10
zC39F23
-
-
BX465185.8
finished
148690 CHORI-211 5' / 3'
610 / 75055
- / -
18417
0
Identified
2017-03-07
agp2oracle
humpub
 
40 DKEY-3A9
alt_ctg23_1_10
zK3A9
-
-
CT573338.17
finished
92863 DanioKey        
  GAP (type-3) length unknown                  
42 CH211-218G4
alt_ctg23_1_11
zC218G4
-
-
CR352242.13
finished
123503 CHORI-211 5' / 3'
54166 / 206513
- / -
54165
0
Identified
2017-03-07
agp2oracle
humpub
 
43 CH211-212E24
alt_ctg23_1_11
zC212E24
-
-
AL928728.9
finished
206513 CHORI-211 5' / 3'
1 / 101164
- / -
11188
0.27
Identified
2005-02-26
find_overl...
badger
 
44 CH211-279A13
alt_ctg23_1_11
zC279A13
-
-
BX322531.7
finished
112322 CHORI-211 5' / 3'
1 / 12629
- / -
14724
0
Identified
2017-03-07
agp2oracle
humpub
 
45 DKEYP-19H2
alt_ctg23_1_11
zKp19H2
-
-
CR854837.11
finished
27353 DanioKeypilot        
  GAP (type-3) length unknown                  
47 CH73-114C19
alt_ctg23_1_12
zH114C19
-
-
CU468228.2
finished
25922 CHORI-73 5' / 5'
22088 / 1
- / -
22087
0
Identified
2017-03-07
agp2oracle
humpub
 
48 CH211-209L14
alt_ctg23_1_12
zC209L14
-
-
BX247945.6
finished
199345 CHORI-211 3' / 5'
199345 / 57174
- / -
57177
0.02
Identified
2006-03-16
find_overl...
badger
 
49 CH211-132N11
alt_ctg23_1_12
zC132N11
-
-
BX005185.5
finished
164521 CHORI-211 3' / 5'
164521 / 125060
- / -
125059
0
Identified
2017-03-07
agp2oracle
humpub
 
50 DKEY-103A3
alt_ctg23_1_12
zK103A3
-
-
BX511184.11
finished
209735 DanioKey        
  GAP (type-3) length unknown                  
52 DKEYP-115F6
alt_ctg23_1_13
zKp115F6
-
-
CU041345.13
finished
50127 DanioKeypilot 3' / 3'
37460 / 165119
- / -
12667
0
Identified
2017-03-07
agp2oracle
humpub
 
53 CH211-157B19
alt_ctg23_1_13
zC157B19
-
-
AL929522.11
finished
165119 CHORI-211 5' / 5'
1 / 49401
- / -
49400
0
Identified
2017-03-07
agp2oracle
humpub
 
54 CH211-224L10
alt_ctg23_1_13
zC224L10
-
-
BX296551.4
finished
180447 CHORI-211        
  GAP (type-3) length unknown                  
56 DKEY-147F3
alt_ctg23_1_14
zK147F3
-
-
CR356239.11
finished
110120 DanioKey 3' / 5'
44385 / 4883
- / -
70617
0
Identified
2017-03-07
agp2oracle
humpub
 
57 CH211-189L6
alt_ctg23_1_14
zC189L6
-
-
AL929578.4
finished
142570 CHORI-211 3' / 5'
142567 / 6006
- / -
6008
0
Identified
2017-03-07
agp2oracle
humpub
 
58 DKEY-108P14
alt_ctg23_1_14
zK108P14
-
-
BX927275.8
finished
133912 DanioKey        
  GAP (type-3) length unknown                  
60 DKEY-109J17
alt_ctg23_1_15
zK109J17
-
-
CR388168.14
finished
158190 DanioKey 3' / 5'
122257 / 1
- / -
35933
0
Identified
2017-03-07
agp2oracle
humpub
 
61 CH211-175P10
alt_ctg23_1_15
zC175P10
-
-
CR628407.6
finished
99310 CHORI-211 3' / 3'
99310 / 147467
- / -
2000
0
Identified
2006-09-03
find_overl...
badger
 
62 DKEY-208D13
alt_ctg23_1_15
zK208D13
-
-
BX649301.3
finished
149467 DanioKey 5' / 5'
1 / 46288
- / -
46287
0
Identified
2017-03-07
agp2oracle
humpub
 
63 CH73-289A15
alt_ctg23_1_15
zH289A15
-
-
CT573385.8
finished
74607 CHORI-73        
  GAP (type-3) length unknown                  
65 DKEY-93L1
alt_ctg23_1_16
zK93L1
-
-
CR352234.11
finished
198117 DanioKey 3' / 3'
130393 / 186708
- / -
67724
0
Identified
2017-03-07
agp2oracle
humpub
 
66 CH211-133L21
alt_ctg23_1_16
zC133L21
-
-
BX323873.9
finished
186708 CHORI-211 5' / 3'
1 / 50344
- / -
5785
0
Identified
2017-03-07
agp2oracle
humpub
 
67 DKEYP-1G12
alt_ctg23_1_16
zKp1G12
-
-
BX323050.6
finished
56129 DanioKeypilot        
  GAP (type-3) length unknown                  
69 RP71-17I16
alt_ctg23_1_17
bZ17I16
-
-
CR749762.6
finished
174955 RPCI-71 3' / 3'
168837 / 176131
- / -
6118
0
Identified
2017-03-07
agp2oracle
humpub
 
70 DKEYP-97F4
alt_ctg23_1_17
zKp97F4
-
-
CR318627.19
finished
176131 DanioKeypilot 5' / 3'
1 / 14140
- / -
160999
0
Identified
2017-03-07
agp2oracle
humpub
 
71 CH211-104F13
alt_ctg23_1_17
zC104F13
-
-
CR352228.11
finished
175139 CHORI-211        
  GAP (type-3) length unknown                  
73 DKEY-25B23
alt_ctg23_1_18
zK25B23
-
-
CR354562.12
finished
201764 DanioKey 5' / 3'
63540 / 198036
- / -
63539
0
Identified
2017-03-07
agp2oracle
humpub
 
74 DKEY-28B17
alt_ctg23_1_18
zK28B17
-
-
BX004787.8
finished
198036 DanioKey 5' / 3'
1 / 148015
- / -
67169
0
Identified
2017-03-07
agp2oracle
humpub
 
75 DKEY-7C22
alt_ctg23_1_18
zK7C22
-
-
CT027552.11
finished
215184 DanioKey        
  GAP (type-3) length unknown                  
77 DKEY-1C11
alt_ctg23_1_19
zK1C11
-
-
CR847529.10
finished
158776 DanioKey 3' / 5'
131414 / 1
- / -
27362
0
Identified
2017-03-07
agp2oracle
humpub
 
78 DKEY-12I13
alt_ctg23_1_19
zK12I13
-
-
BX005199.10
finished
119113 DanioKey 3' / 5'
119113 / 2001
- / -
2000
0
Identified
2003-06-30
find_overl...
badger
 
79 CH211-158G13
alt_ctg23_1_19
zC158G13
-
-
AL929508.6
finished
180029 CHORI-211 3' / 3'
180029 / 94903
- / -
116715
0
Identified
2017-03-07
agp2oracle
humpub
 
80 DKEY-68L7
alt_ctg23_1_19
zK68L7
-
-
BX005235.9
finished
211618 DanioKey        
  GAP (type-3) length unknown                  
82 DKEY-237G3
alt_ctg23_1_20
zK237G3
-
-
CT027629.6
finished
115179 DanioKey 3' / 5'
53318 / 1
- / -
61861
0
Identified
2017-03-07
agp2oracle
humpub
 
83 DKEY-220G10
alt_ctg23_1_20
zK220G10
-
-
BX548008.7
finished
186246 DanioKey 3' / 5'
186246 / 117199
- / -
117198
0
Identified
2017-03-07
agp2oracle
humpub
 
84 CH211-28E16
alt_ctg23_1_20
zC28E16
-
-
CR388207.13
finished
191838 CHORI-211        
  GAP (type-3) length unknown                  
86 CH73-7K20
alt_ctg23_1_21
zH7K20
-
-
CT573317.6
finished
17283 CHORI-73 3' / 3'
3620 / 134385
- / -
20530
0
Identified
2017-03-07
agp2oracle
humpub
 
87 CH211-262O24
alt_ctg23_1_21
zC262O24
-
-
BX294392.3
finished
141252 CHORI-211 5' / 3'
1 / 29610
- / -
121255
0
Identified
2017-03-07
agp2oracle
humpub
 
88 CH211-273O6
alt_ctg23_1_21
zC273O6
-
-
AL929188.6
finished
150865 CHORI-211        
  GAP (type-3) length unknown                  
90 DKEY-98J1
alt_ctg23_1_22
zK98J1
-
-
AL845437.14
finished
239084 DanioKey 5' / 5'
73809 / 1
- / -
73808
0
Identified
2017-03-07
agp2oracle
humpub
 
91 DKEY-283B10
alt_ctg23_1_22
zK283B10
-
-
CR352239.11
finished
160717 DanioKey 3' / 3'
159522 / 30750
- / -
78787
0
Identified
2017-03-07
agp2oracle
humpub
 
92 DKEY-27M6
alt_ctg23_1_22
zK27M6
-
-
CR751236.6
finished
108342 DanioKey        
  GAP (type-3) length unknown                  
94 CH211-135H16
alt_ctg23_1_23
zC135H16
-
-
CR339058.11
finished
110857 CHORI-211 5' / 3'
103024 / 165467
- / -
104570
0
Identified
2017-03-07
agp2oracle
humpub
 
95 CH211-11F6
alt_ctg23_1_23
zC11F6
-
-
BX548074.9
finished
167014 CHORI-211 5' / 5'
3863 / 48378
- / -
52239
0
Identified
2017-03-07
agp2oracle
humpub
 
96 CH73-313G1
alt_ctg23_1_23
zH313G1
-
-
CU459156.8
finished
85468 CHORI-73        
  GAP (type-3) length unknown                  
98 CH73-233L1
alt_ctg23_1_24
zH233L1
-
-
CU062415.7
finished
106932 CHORI-73 3' / 3'
94654 / 198365
- / -
12278
0
Identified
2017-03-07
agp2oracle
humpub
 
99 DKEY-101O12
alt_ctg23_1_24
zK101O12
-
-
BX323989.4
finished
198365 DanioKey 5' / 5'
1 / 136542
- / -
136541
0
Identified
2017-03-07
agp2oracle
humpub
 
100 CH211-203J19
alt_ctg23_1_24
zC203J19
-
-
CR450795.8
finished
162230 CHORI-211        
  GAP (type-3) length unknown                  
102 CH1073-432F14
alt_ctg23_1_25
zFD432F14
-
-
FO704613.2
finished
19056 CHORI1073 3' / 5'
14464 / 1
- / -
4592
0
Identified
2017-03-07
agp2oracle
humpub
 
103 CH211-201A8
alt_ctg23_1_25
zC201A8
-
-
BX928749.12
finished
215263 CHORI-211 3' / 5'
215263 / 147694
- / -
147693
0
Identified
2017-03-07
agp2oracle
humpub
 
104 DKEY-31B16
alt_ctg23_1_25
zK31B16
-
-
BX957326.8
finished
259092 DanioKey        
  GAP (type-3) length unknown                  
106 CH211-39F16
alt_ctg23_1_26
zC39F16
-
-
CU041388.6
finished
205786 CHORI-211 5' / 3'
1 / 27867
- / -
130642
0
Identified
2017-03-07
agp2oracle
humpub
 
107 DKEY-151G10
alt_ctg23_1_26
zK151G10
-
-
CR382340.7
finished
158509 DanioKey        
  GAP (type-3) length unknown                  
109 DKEY-21C19
alt_ctg23_1_27
zK21C19
-
-
BX005414.13
finished
236036 DanioKey 3' / 5'
136576 / 1
- / -
99460
0
Identified
2017-03-07
agp2oracle
humpub
 
110 DKEY-97G16
alt_ctg23_1_27
zK97G16
-
-
BX005387.7
finished
152617 DanioKey 3' / 5'
152617 / 56891
- / -
56890
0
Identified
2017-03-07
agp2oracle
humpub
 
111 DKEY-24L7
alt_ctg23_1_27
zK24L7
-
-
CR318614.7
finished
79471 DanioKey        
  GAP (type-3) length unknown                  
113 CH211-190A18
alt_ctg23_1_28
zC190A18
-
-
CR774183.10
finished
133334 CHORI-211 3' / 5'
115014 / 1
- / -
18320
0
Identified
2017-03-07
agp2oracle
humpub
 
114 DKEY-3P10
alt_ctg23_1_28
zK3P10
-
-
CR361559.12
finished
246041 DanioKey 3' / 3'
246041 / 102844
- / -
102925
0
Identified
2017-03-07
agp2oracle
humpub
 
115 DKEY-157G16
alt_ctg23_1_28
zK157G16
-
-
CR354433.25
finished
205769 DanioKey        
  GAP (type-3) length unknown                  
117 DKEY-228G21
alt_ctg23_1_29
zK228G21
-
-
BX663515.13
finished
224215 DanioKey 5' / 3'
155939 / 225376
- / -
155938
0
Identified
2017-03-07
agp2oracle
humpub
 
118 DKEY-27C4
alt_ctg23_1_29
zK27C4
-
-
BX571968.10
finished
225376 DanioKey 5' / 3'
1 / 140417
- / -
2000
0
Identified
2017-03-07
agp2oracle
humpub
 
119 DKEY-115O4
alt_ctg23_1_29
zK115O4
-
-
CR381567.9
finished
142417 DanioKey 5' / 3'
3 / 206589
- / -
55347
0
Identified
2017-03-07
agp2oracle
humpub
 
120 DKEY-242A8
alt_ctg23_1_29
zK242A8
-
-
BX664745.13
finished
261934 DanioKey        
  GAP (type-3) length unknown                  
122 CH211-189F14
alt_ctg23_1_30
zC189F14
-
-
CR356221.6
finished
54623 CHORI-211 5' / 3'
44332 / 110532
- / -
44331
0
Identified
2017-03-07
agp2oracle
humpub
 
123 DKEYP-116B6
alt_ctg23_1_30
zKp116B6
-
-
BX957303.8
finished
110532 DanioKeypilot 5' / 5'
1 / 74211
- / -
74210
0
Identified
2017-03-07
agp2oracle
humpub
 
124 CH211-129O18
alt_ctg23_1_30
zC129O18
-
-
CR381616.9
finished
89029 CHORI-211        
  GAP (type-3) length unknown                  
126 DKEY-223I19
alt_ctg23_1_31
zK223I19
-
-
BX663608.26
finished
190528 DanioKey 5' / 5'
87747 / 1
- / -
87746
0
Identified
2017-03-07
agp2oracle
humpub
 
127 CH211-74M19
alt_ctg23_1_31
zC74M19
-
-
BX928757.9
finished
152155 CHORI-211 3' / 5'
152155 / 47239
- / -
47238
0
Identified
2017-03-07
agp2oracle
humpub
 
128 CH211-67F18
alt_ctg23_1_31
zC67F18
-
-
CR293528.7
finished
102697 CHORI-211        
  GAP (type-3) length unknown                  
130 DKEYP-78A6
alt_ctg23_1_32
zKp78A6
-
-
CR753893.6
finished
197503 DanioKeypilot 3' / 5'
161348 / 3
- / -
36157
0
Identified
2017-03-07
agp2oracle
humpub
 
131 DKEYP-95E3
alt_ctg23_1_32
zKp95E3
-
-
AL929139.7
finished
70307 DanioKeypilot 3' / 5'
70307 / 2001
- / -
2000
0
Identified
2003-07-03
find_overl...
badger
 
132 DKEY-105A6
alt_ctg23_1_32
zK105A6
-
-
AL845422.6
finished
221136 DanioKey 3' / 5'
221136 / 6440
- / -
6439
0
Identified
2017-03-07
agp2oracle
humpub
 
133 DKEY-202M22
alt_ctg23_1_32
zK202M22
-
-
AL845357.6
finished
221012 DanioKey        
  GAP (type-3) length unknown                  
135 DKEY-261L7
alt_ctg23_1_33
zK261L7
-
-
CR759802.10
finished
132755 DanioKey 3' / 3'
97500 / 203127
- / -
35255
0
Identified
2017-03-07
agp2oracle
humpub
 
136 CH211-209B6
alt_ctg23_1_33
zC209B6
-
-
BX322566.6
finished
203127 CHORI-211 5' / 5'
1 / 65861
- / -
65860
0
Identified
2017-03-07
agp2oracle
humpub
 
137 DKEYP-79F12
alt_ctg23_1_33
CONTAINER
zKp79F12
-
-
CR759830.8
finished
196033 DanioKeypilot 3' / 3'
67536 / 124070
- / -
124070
0
Identified
2017-03-07
agp2oracle
humpub
 
138 DKEY-266K15
alt_ctg23_1_33
CONTAINED
zK266K15
-
-
BX530074.13
finished
124070 DanioKey 5' / 5'
1 / 180670
- / -
124070
0
Identified
2017-03-07
agp2oracle
humpub
 
137 DKEYP-79F12
alt_ctg23_1_33
CONTAINER
zKp79F12
-
-
CR759830.8
finished
196033 DanioKeypilot        
  GAP (type-3) length unknown                  
140 DKEY-161P7
alt_ctg23_1_34
CONTAINER
zK161P7
-
-
BX927365.7
finished
229608 DanioKey 3' / 3'
11149 / 180638
- / -
180638
0
Identified
2017-03-07
agp2oracle
humpub
 
141 CH211-12E7
alt_ctg23_1_34
CONTAINED
zC12E7
-
-
BX323831.7
finished
180638 CHORI-211 5' / 5'
1 / 195267
- / -
180638
0
Identified
2017-03-07
agp2oracle
humpub
 
140 DKEY-161P7
alt_ctg23_1_34
CONTAINER
zK161P7
-
-
BX927365.7
finished
229608 DanioKey        
  GAP (type-3) length unknown                  
143 DKEY-197C14
alt_ctg23_1_35
zK197C14
-
-
CU469363.8
finished
139797 DanioKey 3' / 5'
49718 / 1
- / -
90079
0
Identified
2017-03-07
agp2oracle
humpub
 
144 CH211-229G3
alt_ctg23_1_35
zC229G3
-
-
AL807377.10
finished
170231 CHORI-211 3' / 5'
170231 / 2001
- / -
2000
0
Identified
2005-02-04
find_overl...
badger
 
145 CH211-240A8
alt_ctg23_1_35
zC240A8
-
-
BX119991.17
finished
101348 CHORI-211 3' / 5'
101348 / 85278
- / -
85277
0
Identified
2017-03-07
agp2oracle
humpub
 
146 CH211-66I15
alt_ctg23_1_35
zC66I15
-
-
BX957355.14
finished
155581 CHORI-211        
  GAP (type-3) length unknown                  
148 CH211-222C18
alt_ctg23_1_36
zC222C18
-
-
BX322662.12
finished
209409 CHORI-211 5' / 5'
1 / 42226
- / -
42225
0
Identified
2017-03-07
agp2oracle
humpub
 
149
alt_ctg23_1_36
CABZ01049768
-
-
CABZ01049768.1
finished
61835 -        
  GAP (type-3) length unknown                  
151 CH73-269M23
alt_ctg23_1_37
zH269M23
-
-
CU682777.6
finished
84833 CHORI-73 5' / 3'
24559 / 74936
- / -
24558
0
Identified
2017-03-07
agp2oracle
humpub
 
152 DKEY-232A10
alt_ctg23_1_37
zK232A10
-
-
BX510651.9
finished
74936 DanioKey 5' / 3'
26083 / 42170
- / -
51046
0
Identified
2017-03-07
agp2oracle
humpub
 
153 CH73-361H17
alt_ctg23_1_37
zH361H17
-
-
CU682622.9
finished
67134 CHORI-73        

Statistics

Help

Clone Summary

Number of gaps
36
Gap types
type-3
36
Total clones
117
Clone HTGS Phases
finished
117
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
5,167,675
Total finished length of fin clones w/ overlap
17,654,233
Total finished length of fin clones w/o overlap
12,486,558
Total overlap length of fin+unfin clones
5,167,675
Total finished length of fin+unfin clones w/ overlap
17,654,233
Total finished length of fin+unfin clones w/o overlap
12,486,558

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