Transcriptome profile for sa11

Morphological Phenotype:
Control on top; Mutant below; 48 hpf

Control on top; Mutant below; 48 hpf

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Stage Entity Quality Tag
Hatching:Long-pec
ZFS:0000033
eye
ZFA:0000107
decreased size
PATO:0000587
abnormal
PATO:0000460
Hatching:Long-pec
ZFS:0000033
whole organism
ZFA:0001094
decreased size
PATO:0000587
abnormal
PATO:0000460

The table belows shows the transcriptome profile for allele sa11.

Please see our FAQs for details on the methodology. Also you can hover over each column heading below for more information.

The following regions have been identified as being significantly differentially expressed:

Region 3' end position 3' end strand Adjusted p-value Log2 fold change (mutant/sibling) Closest Ensembl gene 3' end Gene name e74 Ensembl gene ID e74 Ensembl transcript ID Gene description tpp1_mut1 normalised count tpp1_wt1 normalised count tpp1_mut2 normalised count tpp1_wt2 normalised count tpp1_mut3 normalised count tpp1_wt3 normalised count
Zv9_NA19:2629-2800 2629 -1 4.20 × 10-07 4.2 n/a n/a n/a n/a n/a 31.3 3.0 95.7 3.3 35.6 2.5
5:37141314-37141800 37141314 -1 9.14 × 10-06 4.0 3341 n/a n/a n/a n/a 44.4 4.5 76.8 2.6 17.0 1.2
7:7293318-7293900 7293318 -1 9.87 × 10-06 -1.5 -675 n/a n/a n/a n/a 263.2 887.3 251.9 707.1 281.7 612.2
17:32942571-32943900 32942571 -1 4.87 × 10-05 -1.8 -1334 n/a n/a n/a n/a 125.1 535.7 52.9 124.4 100.6 311.0
14:23136201-23136623 23136623 1 9.01 × 10-05 2.3 -760 n/a n/a n/a n/a 117.8 13.6 113.3 35.1 122.3 24.7
17:32835601-32836033 32836033 1 2.64 × 10-04 -2.3 -8 ctsba ENSDARG00000055120 ENSDART00000077418 cathepsin B, a [Source:ZFIN;Acc:ZDB-GENE-040426-2650] 178.9 888.8 0.6 0.7 116.1 571.4
18:38658110-38659100 38658110 -1 2.64 × 10-04 3.8 118665 n/a n/a n/a n/a 18.9 1.5 117.7 4.6 34.1 6.2
4:44014901-44015117 44015117 1 2.94 × 10-04 1.9 -1755 n/a n/a n/a n/a 37.1 12.1 147.3 32.4 97.5 30.9
7:7291701-7292100 7291546 -1 2.94 × 10-04 -1.7 189 n/a n/a n/a n/a 30.5 111.7 11.3 42.3 35.6 96.3
20:31298001-31298600 31298611 1 3.29 × 10-04 4.1 -11885 n/a n/a n/a n/a 74.9 7.5 30.9 6.0 193.5 3.7
18:38678201-38679000 n/a -1 3.80 × 10-04 4.0 n/a n/a n/a n/a n/a 8.0 0.0 62.3 4.6 26.3 1.2
3:22411301-22411519 22411519 1 4.16 × 10-04 3.1 45733 n/a n/a n/a n/a 41.4 6.0 28.3 4.0 27.9 1.2
4:44019401-44019634 44019634 1 7.90 × 10-04 1.8 -51 CU278559.2 ENSDARG00000087914 ENSDART00000126931 n/a 56.7 18.1 70.5 19.8 58.8 16.0
4:52439501-52439825 52439825 1 7.97 × 10-04 -1.5 84633 n/a n/a n/a n/a 39.3 95.1 63.0 158.8 34.1 119.7
17:16407701-16408000 n/a 1 7.97 × 10-04 -3.9 n/a n/a n/a n/a n/a 0.0 25.7 3.1 35.1 3.1 30.9
10:45039701-45040100 n/a -1 8.49 × 10-04 -1.9 n/a n/a n/a n/a n/a 52.4 153.9 45.3 276.5 69.7 177.7
5:1190963-1194100 1190963 -1 1.33 × 10-03 0.8 -194 n/a n/a n/a n/a 9274.0 5328.3 11859.0 7070.4 16043.0 9179.9
5:4384206-4384400 4384206 -1 1.95 × 10-03 2.0 -1708 n/a n/a n/a n/a 86.5 12.1 282.7 56.2 128.5 55.5
20:54323101-54323400 54322502 -1 1.95 × 10-03 2.0 -1 hsp90aa1.2 ENSDARG00000024746 ENSDART00000023550 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-031001-3] 112.7 28.7 54.8 9.9 18.6 7.4
23:21763346-21763800 21763346 -1 3.02 × 10-03 -1.5 -1 her4.2 ENSDARG00000056729 ENSDART00000104206 hairy-related 4, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060815-1] 34.9 77.0 29.0 81.4 37.1 118.5
3:61053701-61054571 61054571 1 3.40 × 10-03 1.3 -38924 n/a n/a n/a n/a 171.6 70.9 237.4 78.1 227.5 118.5
5:49950685-49951000 49950685 -1 3.40 × 10-03 -1.3 2204 n/a n/a n/a n/a 54.5 129.8 73.0 252.0 145.5 290.0
19:1978501-1978800 1975674 -1 3.44 × 10-03 0.9 4 rplp1 ENSDARG00000021864 ENSDART00000148062 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663] 1465.2 843.5 1877.0 845.4 2080.3 1168.8
23:28588452-28588700 28588452 -1 8.56 × 10-03 -1.5 -1572 n/a n/a n/a n/a 90.2 176.6 50.4 191.2 26.3 101.2
13:33832601-33832900 33833880 1 0.01 1.0 -22 cfl1l ENSDARG00000012972 ENSDART00000026464 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770] 243.6 117.7 206.5 108.5 162.5 83.9
22:18522201-18522477 18522477 1 0.01 -1.3 17950 n/a n/a n/a n/a 42.9 89.0 29.6 97.2 41.8 101.2
25:36201645-36202000 36201645 -1 0.01 -1.6 17 si:ch211-113a14.19 ENSDARG00000075379 ENSDART00000113870 si:ch211-113a14.19 [Source:ZFIN;Acc:ZDB-GENE-121214-198] 32.7 73.9 13.2 58.9 23.2 71.6
4:43941621-43942200 43941621 -1 0.01 1.2 -1351 n/a n/a n/a n/a 515.5 316.9 877.7 302.3 707.3 291.3
4:8903701-8904511 8904511 1 0.01 1.1 -1561 n/a n/a n/a n/a 99.6 42.3 175.7 84.7 140.9 67.9
23:32295101-32295482 32295482 1 0.02 2.4 -2469 n/a n/a n/a n/a 113.4 13.6 22.7 9.3 38.7 9.9
20:55784901-55788413 55788413 1 0.02 0.8 -193 n/a n/a n/a n/a 9617.2 5814.2 10509.6 6685.4 16388.2 8548.0
Zv9_NA699:11899-12100 11899 -1 0.02 2.5 n/a n/a n/a n/a n/a 57.4 16.6 178.8 14.6 51.1 18.5
3:16631101-16631468 16631468 1 0.02 2.1 -853 n/a n/a n/a n/a 121.4 33.2 96.3 48.3 352.9 49.4
6:37249801-37250000 37252789 1 0.02 2.0 -2330 n/a n/a n/a n/a 27.6 13.6 47.2 11.2 94.4 18.5
6:51515101-51515600 n/a -1 0.02 1.5 n/a n/a n/a n/a n/a 44.4 18.1 40.9 15.2 96.0 29.6
7:23977101-23977387 23977387 1 0.02 1.3 3493 n/a n/a n/a n/a 94.5 45.3 61.1 31.1 301.8 104.9
23:21768001-21768615 21768615 1 0.02 -1.2 -3 si:ch73-21g5.7 ENSDARG00000093156 ENSDART00000142921 si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260] 71.3 123.7 85.0 246.7 97.5 216.0
15:34928501-34928800 n/a -1 0.02 -2.0 n/a n/a n/a n/a n/a 10.2 63.4 7.6 22.5 15.5 43.2
11:43161401-43162022 43162022 1 0.02 -1.4 -60996 n/a n/a n/a n/a 53.1 108.6 50.4 123.0 27.9 124.7
4:43905743-43906100 43905743 -1 0.02 1.3 -43 CT583728.15 ENSDARG00000089273 ENSDART00000124095 n/a 62.5 27.2 85.6 31.1 60.4 24.7
5:656601-656900 n/a -1 0.03 2.1 n/a n/a n/a n/a n/a 30.5 9.1 21.4 4.6 29.4 4.9
19:1977201-1977300 1975674 -1 0.03 1.1 4 rplp1 ENSDARG00000021864 ENSDART00000148062 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663] 1387.4 789.2 1251.1 737.5 2877.4 1094.7
7:7241601-7241881 7241881 1 0.03 -1.6 -12 zgc:163047 ENSDARG00000094931 ENSDART00000139269 zgc:163047 [Source:ZFIN;Acc:ZDB-GENE-070424-50] 28.4 73.9 8.8 46.3 18.6 46.9
7:6755901-6756320 6756320 1 0.03 -1.7 1174 n/a n/a n/a n/a 12.4 58.9 9.4 37.0 18.6 38.3
17:16574701-16575036 16575036 1 0.04 -1.2 -532 n/a n/a n/a n/a 30.5 93.6 45.3 102.5 35.6 67.9
22:18527601-18527925 18527925 1 0.04 -1.4 23398 n/a n/a n/a n/a 25.4 58.9 34.6 76.7 20.1 82.7
17:16374001-16374303 16374303 1 0.05 -2.0 -5 efcab11 ENSDARG00000043740 ENSDART00000064233 EF-hand calcium binding domain 11 [Source:ZFIN;Acc:ZDB-GENE-050417-348] 6.5 31.7 6.3 17.9 9.3 37.0
* quick link - http://q.sanger.ac.uk/fdfjv7w4