Transcriptome profile for sa86

Morphological Phenotype:
Control; 48 hpf

Control; 48 hpf

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Mutant; 48 hpf

Mutant; 48 hpf

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Stage Entity Quality Tag
Hatching:Long-pec
ZFS:0000033
eye
ZFA:0000107
decreased size
PATO:0000587
abnormal
PATO:0000460

The table belows shows the transcriptome profile for allele sa86.

Please see our FAQs for details on the methodology. Also you can hover over each column heading below for more information.

The following regions have been identified as being significantly differentially expressed:

Region 3' end position 3' end strand Adjusted p-value Log2 fold change (mutant/sibling) Closest Ensembl gene 3' end Gene name e74 Ensembl gene ID e74 Ensembl transcript ID Gene description pax6b_mut1 normalised count pax6b_wt1 normalised count pax6b_mut2 normalised count pax6b_wt2 normalised count pax6b_mut3 normalised count pax6b_wt3 normalised count
1:44901801-44902385 44902385 1 9.13 × 10-10 -4.1 -9 crybb1l2 ENSDARG00000016793 ENSDART00000127087, ENSDART00000127380 crystallin, beta B1, like 2 [Source:ZFIN;Acc:ZDB-GENE-070822-18] 29.2 357.5 15.0 301.5 16.1 367.5
21:38029001-38029552 38029552 1 1.18 × 10-09 -3.9 3 cryba1b ENSDARG00000053875 ENSDART00000075992 crystallin, beta A1b [Source:ZFIN;Acc:ZDB-GENE-040718-326] 94.1 1117.4 56.9 811.5 35.6 940.3
14:49239158-49240000 49239158 -1 5.00 × 10-09 -4.3 986 n/a n/a n/a n/a 19.5 384.1 20.0 269.7 8.0 311.8
9:23168101-23168400 23168078 -1 5.00 × 10-09 -6.1 -2 crygm2d8 ENSDARG00000069817 ENSDART00000101902 crystallin, gamma M2d8 [Source:ZFIN;Acc:ZDB-GENE-040718-321] 1.1 119.8 1.0 79.0 2.3 102.7
6:13690808-13691600 13690808 -1 5.00 × 10-09 -4.5 -2 cryba2a ENSDARG00000030349 ENSDART00000041269 crystallin, beta A2a [Source:ZFIN;Acc:ZDB-GENE-040625-8] 8.7 244.8 5.0 79.9 6.9 140.1
19:11163621-11164000 11163621 -1 1.05 × 10-06 -4.6 -3 lim2.4 ENSDARG00000015445 ENSDART00000104539, ENSDART00000144923 lens intrinsic membrane protein 2.4 [Source:ZFIN;Acc:ZDB-GENE-040718-104] 9.7 232.5 6.0 97.8 1.1 74.8
23:27312201-27313406 27313406 1 5.18 × 10-06 -4.6 -5 mipa ENSDARG00000037285 ENSDART00000054238 major intrinsic protein of lens fiber a [Source:ZFIN;Acc:ZDB-GENE-040801-41] 6.5 221.2 2.0 43.2 5.7 72.9
24:43050801-43051040 43051040 1 5.57 × 10-06 -3.8 -282 n/a n/a n/a n/a 48.7 382.0 14.0 336.5 14.9 328.2
9:23220540-23221100 23220540 -1 5.90 × 10-06 -5.5 36 zgc:165347 ENSDARG00000076693 ENSDART00000110933 zgc:165347 [Source:ZFIN;Acc:ZDB-GENE-070720-9] 1.1 117.8 2.0 46.4 2.3 72.9
10:45552401-45552600 n/a 1 9.97 × 10-06 -5.2 n/a n/a n/a n/a n/a 3.2 158.8 2.0 44.0 1.1 27.8
10:45553889-45554200 45553889 -1 1.02 × 10-05 -3.7 -30516 n/a n/a n/a n/a 36.8 244.8 31.9 436.7 22.9 475.9
14:49255101-49255476 49255476 1 3.34 × 10-05 -3.5 1 cryba1l1 ENSDARG00000032929 ENSDART00000047525 crystallin, beta A1, like 1 [Source:ZFIN;Acc:ZDB-GENE-050417-249] 48.7 355.4 22.0 255.0 16.1 400.1
10:45523367-45523800 45523367 -1 3.98 × 10-05 -3.8 -3 crybb1 ENSDARG00000068507 ENSDART00000145404 crystallin, beta B1 [Source:ZFIN;Acc:ZDB-GENE-010813-1] 41.1 392.3 26.0 249.3 13.8 457.7
24:43050101-43050300 43051040 1 3.98 × 10-05 -6.3 -282 n/a n/a n/a n/a 3.2 267.3 0.0 36.7 1.1 34.5
12:32529926-32530300 32529926 -1 5.72 × 10-05 -5.5 0 crygmxl2 ENSDARG00000074001 ENSDART00000146367 crystallin, gamma MX, like 2 [Source:ZFIN;Acc:ZDB-GENE-050522-401] 2.2 129.1 0.0 72.5 4.6 100.7
9:23238123-23238700 23238123 -1 5.63 × 10-04 -5.1 -101 n/a n/a n/a n/a 2.2 63.5 3.0 57.0 0.0 56.6
9:23343326-23343700 23343326 -1 5.76 × 10-04 -5.8 0 crygm2d10 ENSDARG00000087765 ENSDART00000125856 crystallin, gamma M2d10 [Source:ZFIN;Acc:ZDB-GENE-071004-96] 1.1 42.0 2.0 50.5 0.0 73.9
1:44877401-44877900 44877401 -1 6.18 × 10-04 -3.6 0 cryba1l2 ENSDARG00000014803 ENSDART00000023642 crystallin, beta A1, like 2 [Source:ZFIN;Acc:ZDB-GENE-041010-40] 7.6 67.6 3.0 49.7 3.4 49.9
10:30804046-30804300 30804046 -1 1.84 × 10-03 -3.6 -14 lim2.1 ENSDARG00000068974 ENSDART00000078800 lens intrinsic membrane protein 2.1 [Source:ZFIN;Acc:ZDB-GENE-050522-398] 7.6 61.5 3.0 54.6 2.3 42.2
9:23372001-23372300 23372001 -1 2.09 × 10-03 -4.4 -14 crygm2d1 ENSDARG00000087324 ENSDART00000060367 crystallin, gamma M2d1 [Source:ZFIN;Acc:ZDB-GENE-050522-395] 1.1 31.8 1.0 37.5 3.4 44.1
9:11831501-11831700 11830594 -1 2.44 × 10-03 -7.1 -3 cryba2b ENSDARG00000041925 ENSDART00000127942 crystallin, beta A2b [Source:ZFIN;Acc:ZDB-GENE-040718-324] 1.1 130.1 0.0 11.4 0.0 9.6
9:23124508-23124800 23124508 -1 4.81 × 10-03 -4.0 0 crygm2d13 ENSDARG00000057460 ENSDART00000123413 crystallin, gamma M2d13 [Source:ZFIN;Acc:ZDB-GENE-040718-105] 1.1 66.6 6.0 46.4 5.7 92.1
23:6688427-6689200 6688427 -1 4.97 × 10-03 -5.8 -3 mipb ENSDARG00000013963 ENSDART00000023793 major intrinsic protein of lens fiber b [Source:ZFIN;Acc:ZDB-GENE-050706-86] 0.0 107.5 1.0 39.1 2.3 43.2
9:11830594-11830900 11830594 -1 4.97 × 10-03 -3.5 -3 cryba2b ENSDARG00000041925 ENSDART00000127942 crystallin, beta A2b [Source:ZFIN;Acc:ZDB-GENE-040718-324] 8.7 104.5 10.0 53.0 4.6 106.5
1:47946201-47946992 47946992 1 0.02 -3.0 1035 n/a n/a n/a n/a 20.6 138.3 11.0 61.9 3.4 73.9
* quick link - http://q.sanger.ac.uk/j2gpide5