GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

A comprehensive family-based replication study of schizophrenia genes.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
as3mt AS3MT ENSDARG00000027572 None Not determined 3
B8JLI4_DANRE FBXO11 ENSDARG00000061631 6 Not determined 1
brd1 BRD1 ENSDARG00000013596 1 Not determined 2
cnnm2a CNNM2 ENSDARG00000061195 2 Not determined 9
cnnm2b CNNM2 ENSDARG00000078733 1 Not determined 9
E2J8V4_DANRE TCF4 ENSDARG00000087652 None Not determined 9
fbxo11 FBXO11 ENSDARG00000059973 1 Not determined 1
fez1 FEZ1 ENSDARG00000023174 None Not determined 2
GRIK3 GRIK3 ENSDARG00000077715 3 Not determined 1
im:7147241 SEC16B ENSDARG00000052046 8 Not determined 5
nt5c2a NT5C2 ENSDARG00000039399 3 Not determined 9
nt5c2b NT5C2 ENSDARG00000058231 2 Not determined 9
pom121 POM121L2 ENSDARG00000055113 2 Not determined 2
si:dkey-70b23.1 ARHGAP31 ENSDARG00000059472 2 Not determined 1
si:dkey-72g4.1 NKAIN2 ENSDARG00000069427 1 Not determined 3
TCF4 (1 of 2) TCF4 ENSDARG00000075546 1 Not determined 9
zgc:100920 NKAIN2 ENSDARG00000042961 1 Not determined 3
zgc:153372 AS3MT ENSDARG00000068967 2 Not determined 3
zgc:158610 BRD1 ENSDARG00000051798 1 Not determined 2

The following reported genes could not be linked automatically to a zebrafish gene:

  • BAG6
  • CLC
  • LGALS17A
  • NOTCH4
  • NOTCH4
  • PRRC2A
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