(GWAS data used on the Zebrafish Mutation Project Web site comes from

Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
abcb3l1 TAP2 ENSDARG00000036787 2 Normal 3
jarid2a JARID2 ENSDARG00000060925 4 Not determined 3
jarid2b JARID2 ENSDARG00000062268 3 Not determined 3
LOC556826 TAP2 ENSDARG00000033446 3 Not determined 3
LOC797048 RNF182 ENSDARG00000059854 None Not determined 1
mhc2dab HLA-DRB5 ENSDARG00000079105 None Not determined 6
mhc2dab HLA-DQB2 ENSDARG00000079105 None Not determined 3
mhc2dab HLA-DQB1 ENSDARG00000079105 None Not determined 24
mhc2dab HLA-DRB1 ENSDARG00000079105 None Not determined 35
NP_001091732.1 HLA-DRB5 ENSDARG00000071168 1 Not determined 6
NP_001091732.1 HLA-DQB2 ENSDARG00000071168 1 Not determined 3
NP_001091732.1 HLA-DQB1 ENSDARG00000071168 1 Not determined 24
NP_001091732.1 HLA-DRB1 ENSDARG00000071168 1 Not determined 35
si:busm1-104n07.3 HLA-DQB1 ENSDARG00000074510 1 Normal 24
si:busm1-104n07.3 HLA-DRB1 ENSDARG00000074510 1 Normal 35
si:busm1-104n07.3 HLA-DRB5 ENSDARG00000074510 1 Normal 6
si:busm1-104n07.3 HLA-DQB2 ENSDARG00000074510 1 Normal 3
si:busm1-160c18.1 HLA-DQA1 ENSDARG00000053739 1 Not determined 27
si:busm1-160c18.1 HLA-DRA ENSDARG00000053739 1 Not determined 21
si:busm1-160c18.1 HLA-DQA2 ENSDARG00000053739 1 Not determined 17
si:busm1-160c18.3 HLA-DQB2 ENSDARG00000053738 None Not determined 3
si:busm1-160c18.3 HLA-DQB1 ENSDARG00000053738 None Not determined 24
si:busm1-160c18.3 HLA-DRB1 ENSDARG00000053738 None Not determined 35
si:busm1-160c18.3 HLA-DRB5 ENSDARG00000053738 None Not determined 6
si:busm1-160c18.3 HLA-DRB1 ENSDARG00000093706 None Not determined 35
si:busm1-160c18.3 HLA-DRB5 ENSDARG00000093706 None Not determined 6
si:busm1-160c18.3 HLA-DQB2 ENSDARG00000093706 None Not determined 3
si:busm1-160c18.3 HLA-DQB1 ENSDARG00000093706 None Not determined 24
si:busm1-194e12.11 HLA-DRA ENSDARG00000055441 None Not determined 21
si:busm1-194e12.11 HLA-DQA2 ENSDARG00000055441 None Not determined 17
si:busm1-194e12.11 HLA-DQA1 ENSDARG00000055441 None Not determined 27
si:busm1-194e12.12 HLA-DRB5 ENSDARG00000055447 None Not determined 6
si:busm1-194e12.12 HLA-DQB2 ENSDARG00000055447 None Not determined 3
si:busm1-194e12.12 HLA-DQB1 ENSDARG00000055447 None Not determined 24
si:busm1-194e12.12 HLA-DRB1 ENSDARG00000055447 None Not determined 35
si:busm1-228j01.3 HLA-DQA1 ENSDARG00000086294 3 Not determined 27
si:busm1-228j01.3 HLA-DRA ENSDARG00000086294 3 Not determined 21
si:busm1-228j01.3 HLA-DQA2 ENSDARG00000086294 3 Not determined 17
si:busm1-228j01.4 HLA-DRB5 ENSDARG00000088872 1 Not determined 6
si:busm1-228j01.4 HLA-DQB2 ENSDARG00000088872 1 Not determined 3
si:busm1-228j01.4 HLA-DQB1 ENSDARG00000088872 1 Not determined 24
si:busm1-228j01.4 HLA-DRB1 ENSDARG00000088872 1 Not determined 35
si:busm1-228j01.5 HLA-DQA1 ENSDARG00000079593 2 Not determined 27
si:busm1-228j01.5 HLA-DRA ENSDARG00000079593 2 Not determined 21
si:busm1-228j01.5 HLA-DQA2 ENSDARG00000079593 2 Not determined 17
si:busm1-228j01.6 HLA-DRB5 ENSDARG00000041705 None Not determined 6
si:busm1-228j01.6 HLA-DQB2 ENSDARG00000041705 None Not determined 3
si:busm1-228j01.6 HLA-DQB1 ENSDARG00000041705 None Not determined 24
si:busm1-228j01.6 HLA-DRB1 ENSDARG00000041705 None Not determined 35
si:ch1073-403i13.1 HLA-DRA ENSDARG00000001832 None Not determined 21
si:ch1073-403i13.1 HLA-DQA2 ENSDARG00000001832 None Not determined 17
si:ch1073-403i13.1 HLA-DQA1 ENSDARG00000001832 None Not determined 27
si:ch73-211l2.3 HLA-DQA1 ENSDARG00000075932 1 Not determined 27
si:ch73-211l2.3 HLA-DRA ENSDARG00000075932 1 Not determined 21
si:ch73-211l2.3 HLA-DQA2 ENSDARG00000075932 1 Not determined 17
si:dkeyp-2h4.2 HLA-DQA1 ENSDARG00000031745 None Not determined 27
si:dkeyp-2h4.2 HLA-DRA ENSDARG00000031745 None Not determined 21
si:dkeyp-2h4.2 HLA-DQA2 ENSDARG00000031745 None Not determined 17
si:rp71-15d4.1 LPXN ENSDARG00000079315 None Not determined 2
si:zfos-2070c2.1 HLA-DRA ENSDARG00000070206 None Not determined 21
si:zfos-2070c2.1 HLA-DQA2 ENSDARG00000070206 None Not determined 17
si:zfos-2070c2.1 HLA-DQA1 ENSDARG00000070206 None Not determined 27
si:zfos-2070c2.3 HLA-DRB5 ENSDARG00000076307 None Not determined 6
si:zfos-2070c2.3 HLA-DQB2 ENSDARG00000076307 None Not determined 3
si:zfos-2070c2.3 HLA-DQB1 ENSDARG00000076307 None Not determined 24
si:zfos-2070c2.3 HLA-DRB1 ENSDARG00000076307 None Not determined 35
si:zfos-367g9.1 HLA-DQA1 ENSDARG00000074816 1 Not determined 27
si:zfos-367g9.1 HLA-DRA ENSDARG00000074816 1 Not determined 21
si:zfos-367g9.1 HLA-DQA2 ENSDARG00000074816 1 Not determined 17
wu:fd58b11 HLA-DRB1 ENSDARG00000054921 None Not determined 35
wu:fd58b11 HLA-DRB5 ENSDARG00000054921 None Not determined 6
wu:fd58b11 HLA-DQB2 ENSDARG00000054921 None Not determined 3
wu:fd58b11 HLA-DQB1 ENSDARG00000054921 None Not determined 24
zgc:123107 HLA-DQA1 ENSDARG00000020286 None Not determined 27
zgc:123107 HLA-DRA ENSDARG00000020286 None Not determined 21
zgc:123107 HLA-DQA2 ENSDARG00000020286 None Not determined 17
zgc:153067 HLA-DRB5 ENSDARG00000056330 1 Not determined 6
zgc:153067 HLA-DQB2 ENSDARG00000056330 1 Not determined 3
zgc:153067 HLA-DQB1 ENSDARG00000056330 1 Not determined 24
zgc:153067 HLA-DRB1 ENSDARG00000056330 1 Not determined 35
zgc:153414 RNF182 ENSDARG00000061049 None Not determined 1
zgc:165481 RNF182 ENSDARG00000060092 None Not determined 1

The following reported genes could not be linked automatically to a zebrafish gene:

  • BTLN2
  • ZFP91-CNTF
  • ZFP91-CNTF