GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

A genome-wide integrative genomic study localizes genetic factors influencing antibodies against Epstein-Barr virus nuclear antigen 1 (EBNA-1).

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
bat2 BAT2 ENSDARG00000031494 8 Not determined 2
ehmt2 EHMT2 ENSDARG00000077703 None Not determined 2
mhc2dab HLA-DRB1 ENSDARG00000079105 None Not determined 35
mhc2dab HLA-DQB1 ENSDARG00000079105 None Not determined 24
NP_001091732.1 HLA-DQB1 ENSDARG00000071168 1 Not determined 24
NP_001091732.1 HLA-DRB1 ENSDARG00000071168 1 Not determined 35
prrt1 PRRT1 ENSDARG00000062208 None Not determined 2
si:busm1-104n07.3 HLA-DQB1 ENSDARG00000074510 1 Normal 24
si:busm1-104n07.3 HLA-DRB1 ENSDARG00000074510 1 Normal 35
si:busm1-160c18.3 HLA-DQB1 ENSDARG00000053738 None Not determined 24
si:busm1-160c18.3 HLA-DRB1 ENSDARG00000053738 None Not determined 35
si:busm1-160c18.3 HLA-DQB1 ENSDARG00000093706 None Not determined 24
si:busm1-160c18.3 HLA-DRB1 ENSDARG00000093706 None Not determined 35
si:busm1-194e12.12 HLA-DQB1 ENSDARG00000055447 None Not determined 24
si:busm1-194e12.12 HLA-DRB1 ENSDARG00000055447 None Not determined 35
si:busm1-228j01.4 HLA-DQB1 ENSDARG00000088872 2 Not determined 24
si:busm1-228j01.4 HLA-DRB1 ENSDARG00000088872 2 Not determined 35
si:busm1-228j01.6 HLA-DQB1 ENSDARG00000041705 1 Not determined 24
si:busm1-228j01.6 HLA-DRB1 ENSDARG00000041705 1 Not determined 35
si:zfos-2070c2.3 HLA-DQB1 ENSDARG00000076307 None Not determined 24
si:zfos-2070c2.3 HLA-DRB1 ENSDARG00000076307 None Not determined 35
wu:fd58b11 HLA-DQB1 ENSDARG00000054921 None Not determined 24
wu:fd58b11 HLA-DRB1 ENSDARG00000054921 None Not determined 35
zgc:153067 HLA-DRB1 ENSDARG00000056330 2 Not determined 35
zgc:153067 HLA-DQB1 ENSDARG00000056330 2 Not determined 24
zgc:171777 BAT4 ENSDARG00000053995 1 Not determined 1

The following reported genes could not be linked automatically to a zebrafish gene:

  • C6orf15
  • HLA-B
  • NOTCH4
  • PSORS1C1
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