GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
ADAM12 ADAM12 ENSDARG00000079068 1 Not determined 3
ankrd13a ANKRD13A ENSDARG00000061901 None Not determined 1
anks1b ANKS1B ENSDARG00000003512 5 Not determined 7
C10orf90 C10orf90 ENSDARG00000089024 1 Not determined 1
ca16b PTPRG ENSDARG00000060123 3 Not determined 5
cacnb2a CACNB2 ENSDARG00000079906 None Not determined 8
cacnb2b CACNB2 ENSDARG00000055565 2 Not determined 8
clec14a CLEC14A ENSDARG00000026751 None Not determined 1
col4a3 COL4A3 ENSDARG00000003395 2 Not determined 2
CREBBP (3 of 3) CREBBP ENSDARG00000060976 None Not determined 3
crebbpa CREBBP ENSDARG00000061308 3 Not determined 3
crebbpb CREBBP ENSDARG00000063102 1 Normal 3
emp2 EMP2 ENSDARG00000044588 None Not determined 2
ep300a CREBBP ENSDARG00000062380 None Not determined 3
erg ERG ENSDARG00000077304 1 Not determined 3
GARL3_DANRE GARNL3 ENSDARG00000060631 1 Not determined 1
gb:bc097249 C8orf38 ENSDARG00000053652 1 Not determined 1
git2a GIT2 ENSDARG00000061915 1 Not determined 2
git2b GIT2 ENSDARG00000042791 1 Not determined 2
GRAMD2 (1 of 2) GRAMD2 ENSDARG00000089322 None Not determined 1
KIF13B (2 of 2) KIF13B ENSDARG00000073859 3 Not determined 2
kif13ba KIF13B ENSDARG00000079731 3 Not determined 2
LOC100331283 OTOF ENSDARG00000020581 5 Not determined 2
MLLT4 (2 of 2) MLLT4 ENSDARG00000090354 None Not determined 1
MYO9A (2 of 2) MYO9A ENSDARG00000073843 3 Not determined 2
myo9al1 MYO9A ENSDARG00000076729 10 Not determined 2
NAALADL2 NAALADL2 ENSDARG00000086489 2 Not determined 4
ncoa2 NCOA2 ENSDARG00000017929 3 Not determined 3
NP_001107097.1 TRAP1 ENSDARG00000024317 None Not determined 1
NP_571708.1 ROBO2 ENSDARG00000014891 4 Not determined 2
nr2e3 NR2E3 ENSDARG00000045904 3 Not determined 1
nrxn1a NRXN1 ENSDARG00000061647 3 Normal 4
nrxn1b NRXN1 ENSDARG00000063635 2 Not determined 4
optc OPTC ENSDARG00000014358 1 Not determined 1
otof OTOF ENSDARG00000030832 6 Not determined 2
pcsk5a PCSK5 ENSDARG00000067537 5 Normal 5
pcsk5b PCSK5 ENSDARG00000060518 None Not determined 5
ppl PPL ENSDARG00000037898 5 Not determined 2
ptprga PTPRG ENSDARG00000045006 4 Not determined 5
rcn1 RCN1 ENSDARG00000070006 4 Not determined 1
robo2 ROBO2 ENSDARG00000078366 None Not determined 2
si:busm1-70b1.2 GRAMD2 ENSDARG00000051827 1 Not determined 1
si:ch211-195e3.4 KIF25 ENSDARG00000017532 1 Not determined 1
si:ch211-203l9.3 TPD52 ENSDARG00000061713 None Not determined 1
si:ch211-278j12.1 MLLT4 ENSDARG00000029472 3 Not determined 1
si:ch211-46o5.1 CSMD2 ENSDARG00000001559 8 Not determined 5
si:ch73-126i7.1 VGLL4 ENSDARG00000094332 None Not determined 2
si:dkey-18j18.3 C2orf50 ENSDARG00000078140 None Not determined 1
si:dkey-249g23.1 MYO9A ENSDARG00000006892 3 Not determined 2
si:dkey-269g4.4 ARHGAP32 ENSDARG00000074184 1 Not determined 1
si:dkey-287f10.3 ARHGAP32 ENSDARG00000075334 3 Not determined 1
si:dkey-53d10.1 FAM190A ENSDARG00000075919 1 Not determined 2
slc2a8 SLC2A8 ENSDARG00000020344 4 Not determined 1
smg6 SMG6 ENSDARG00000075957 1 Not determined 5
sstr1 SSTR1 ENSDARG00000003049 None Not determined 1
tchp TCHP ENSDARG00000035605 1 Not determined 1
trap1 TRAP1 ENSDARG00000089242 None Not determined 1
vgll4 VGLL4 ENSDARG00000040114 None Not determined 2
vgll4l VGLL4 ENSDARG00000068409 1 Not determined 2
wwox WWOX ENSDARG00000007614 1 Not determined 9
zgc:103502 CCND3 ENSDARG00000027391 None Not determined 6
zgc:153043 SENP8 ENSDARG00000019595 None Not determined 1
zgc:92757 RAB10 ENSDARG00000046106 None Not determined 2

The following reported genes could not be linked automatically to a zebrafish gene:

  • 5S_rRNA
  • AF086219
  • AF086303
  • AJ276246
  • AK055980
  • AK056332
  • AK125078
  • AK309218
  • AX746649
  • BC035052
  • BC037833
  • BC087858
  • BX247991
  • C4orf17
  • CCDC164
  • CCDC164
  • DD413621
  • DIRC3
  • DKFZp686K1684
  • DQ572382
  • EFCAB11
  • FLJ33534
  • HGC6.1.1
  • HGC6.3
  • ID2B
  • MIR4789
  • PIEZO2
  • SEC14L5
  • SRR
  • TP53AIP1
  • U6
  • U6
  • U6
  • ULBP3
  • VENTXP1
* quick link - http://q.sanger.ac.uk/bkub3pm5