GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
adoa ADO ENSDARG00000042827 1 Not determined 4
adob ADO ENSDARG00000053571 None Not determined 4
CARD11 CARD11 ENSDARG00000052741 5 Not determined 3
ccdc80 CCDC80 ENSDARG00000000002 None Not determined 1
cyp24a1l CYP24A1 ENSDARG00000070420 None Not determined 2
egr2a EGR2 ENSDARG00000044098 None Not determined 3
egr2b EGR2 ENSDARG00000042826 2 Not determined 3
glb1 GLB1 ENSDARG00000036415 6 Not determined 2
kif3a KIF3A ENSDARG00000087538 1 Normal 2
LOC558761 GPSM3 ENSDARG00000086246 None Not determined 2
LOC569128 CCDC80 ENSDARG00000030975 None Not determined 1
LOC799279 IL1RL1 ENSDARG00000090844 None Not determined 8
LOC799320 ZNF365 ENSDARG00000087985 None Not determined 11
ovol1 OVOL1 ENSDARG00000076472 None Not determined 4
Q6DEG6_DANRE KIF3A ENSDARG00000009850 None Not determined 2
si:dkey-17e16.13 OVOL1 ENSDARG00000078256 1 Not determined 4
si:dkey-222e15.2 PFDN4 ENSDARG00000061228 None Not determined 2
wu:fb92b05 CCDC80 ENSDARG00000044695 None Not determined 1
zgc:162962 EGR2 ENSDARG00000087378 None Not determined 3
zgc:56039 C11orf30 ENSDARG00000059059 1 Not determined 5
zgc:56230 CLEC16A ENSDARG00000038094 2 Not determined 13

The following reported genes could not be linked automatically to a zebrafish gene:

  • C6orf10
  • HLA-C
  • IL13
  • IL18R1
  • IL18RAP
  • LOC100505634
  • LOC100630917
  • MIR1208
  • NLRP10
  • OR10A3
* quick link - http://q.sanger.ac.uk/5dnqh3y8