GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
BAIAP2L1 (3 of 3) BAIAP2L1 ENSDARG00000089772 None Not determined 3
baiap2l1a BAIAP2L1 ENSDARG00000029305 2 Normal 3
baiap2l1b BAIAP2L1 ENSDARG00000031119 4 Not determined 3
jmjd1c JMJD1C ENSDARG00000079939 5 Not determined 11
lhcgr LHCGR ENSDARG00000026081 2 Not determined 3
LOC100148803 UGT2B15 ENSDARG00000090488 None Not determined 1
LOC100333044 GCKR ENSDARG00000086620 None Not determined 39
LOC571586 JMJD1C ENSDARG00000077805 9 Not determined 11
nr2f1b NR2F2 ENSDARG00000017168 1 Not determined 3
nr2f2 NR2F2 ENSDARG00000040926 1 Not determined 3
nr2f5 NR2F2 ENSDARG00000033172 None Not determined 3
prmt6 PRMT6 ENSDARG00000069706 1 Not determined 3
shbg SHBG ENSDARG00000019492 1 Not determined 5
si:dkeyp-34f6.1 ZBTB10 ENSDARG00000077101 5 Not determined 3
slco1d1 SLCO1B1 ENSDARG00000060181 2 Not determined 7
ugt2a4 UGT2B15 ENSDARG00000051940 1 Not determined 1
ugt2a5 UGT2B15 ENSDARG00000011537 None Not determined 1
ugt2a6 UGT2B15 ENSDARG00000039501 None Not determined 1
ugt2b1 UGT2B15 ENSDARG00000086865 None Not determined 1
ugt2b1 UGT2B15 ENSDARG00000091624 None Not determined 1
ugt2b3 UGT2B15 ENSDARG00000011197 None Not determined 1
ugt2b3 UGT2B15 ENSDARG00000090391 None Not determined 1
ugt2b5 UGT2B15 ENSDARG00000091797 None Not determined 1
ugt2b6 UGT2B15 ENSDARG00000058841 None Not determined 1
ugt2b6 UGT2B15 ENSDARG00000088038 None Not determined 1
zgc:158689 BAIAP2L1 ENSDARG00000017785 None Not determined 3
znf652 ZNF652 ENSDARG00000062302 1 Not determined 5

The following reported genes could not be linked automatically to a zebrafish gene:

  • TDGF3
  • TDGF3
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