GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Multiple loci influencing hippocampal degeneration identified by genome scan.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
apoeb APOE ENSDARG00000040295 1 Not determined 42
CHD6 CHD6 ENSDARG00000017244 6 Not determined 1
col18a1 COL18A1 ENSDARG00000036558 1 Not determined 1
f5 F5 ENSDARG00000055705 8 Not determined 7
lhfp LHFP ENSDARG00000004363 None Not determined 1
mettl8 METTL8 ENSDARG00000017359 1 Not determined 1
si:ch211-260g14.4 SELP ENSDARG00000042138 5 Not determined 4
si:ch211-260g14.8 SELP ENSDARG00000009123 4 Not determined 4
si:ch73-116b16.2 SLC1A7 ENSDARG00000026248 None Not determined 2
slc1a7a SLC1A7 ENSDARG00000034940 1 Not determined 2
slc1a8a SLC1A7 ENSDARG00000034628 2 Not determined 2
slc1a8b SLC1A7 ENSDARG00000032465 None Not determined 2
ttc27 TTC27 ENSDARG00000007918 1 Not determined 1
zgc:110064 APOE ENSDARG00000086370 1 Not determined 42

The following reported genes could not be linked automatically to a zebrafish gene:

  • GCFC2
  • TLE1
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