GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association analysis identifies susceptibility loci for migraine without aura.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
ASTN2 (3 of 3) ASTN2 ENSDARG00000090831 None Not determined 9
ASTN2 (2 of 3) ASTN2 ENSDARG00000086640 None Not determined 9
ASTN2 (1 of 3) ASTN2 ENSDARG00000089410 1 Not determined 9
inaa INA ENSDARG00000011862 1 Not determined 1
inab INA ENSDARG00000053248 None Not determined 1
march4 MARCH4 ENSDARG00000056439 1 Not determined 1
mef2d MEF2D ENSDARG00000040237 None Not determined 1
mmp17a MMP17 ENSDARG00000078915 None Not determined 1
mmp17b MMP17 ENSDARG00000075547 2 Not determined 1
si:ch73-60e21.3 LRP1 ENSDARG00000029146 9 Not determined 6
si:dkey-101k6.5 TGFBR2 ENSDARG00000055136 2 Not determined 2
tgfbr2 TGFBR2 ENSDARG00000034541 None Not determined 2
TGFBR2 (2 of 2) TGFBR2 ENSDARG00000059363 2 Not determined 2
zgc:153256 MARCH4 ENSDARG00000055839 None Not determined 1
zgc:65851 INA ENSDARG00000012281 1 Not determined 1
zgc:92375 FHL5 ENSDARG00000014805 3 Not determined 2

The following reported genes could not be linked automatically to a zebrafish gene:

  • PHACTR1
  • TRPM8
* quick link - http://q.sanger.ac.uk/cbn20ped