GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

A genome-wide association study of host genetic determinants of the antibody response to Anthrax Vaccine Adsorbed.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
A7MC08_DANRE OLFM4 ENSDARG00000041960 None Not determined 3
ASTN2 (3 of 3) ASTN2 ENSDARG00000090831 None Not determined 9
ASTN2 (2 of 3) ASTN2 ENSDARG00000086640 None Not determined 9
ASTN2 (1 of 3) ASTN2 ENSDARG00000089410 1 Not determined 9
h2afy H2AFY ENSDARG00000053442 1 Not determined 3
LOC100002026 PCDH8 ENSDARG00000042586 1 Not determined 2
LOC100151181 SMAD4 ENSDARG00000070428 2 Not determined 1
LOC100330946 MEX3C ENSDARG00000068971 None Not determined 2
LOC568576 OLFM4 ENSDARG00000086947 1 Not determined 3
LOC568857 OLFM4 ENSDARG00000086688 1 Not determined 3
LOC569427 OLFM4 ENSDARG00000087625 2 Not determined 3
LOC797571 OLFM4 ENSDARG00000074322 1 Not determined 3
mhc2dab HLA-DRB1 ENSDARG00000079105 None Not determined 35
NP_001091732.1 HLA-DRB1 ENSDARG00000071168 1 Not determined 35
NP_001116172.1 SMAD4 ENSDARG00000075226 1 Not determined 1
pcdh8 PCDH8 ENSDARG00000006467 1 Not determined 2
pitx1 PITX1 ENSDARG00000042785 None Not determined 4
ppa2 PPA2 ENSDARG00000009685 2 Not determined 2
si:busm1-104n07.3 HLA-DRB1 ENSDARG00000074510 1 Normal 35
si:busm1-160c18.1 HLA-DQA1 ENSDARG00000053739 None Not determined 27
si:busm1-160c18.3 HLA-DRB1 ENSDARG00000053738 None Not determined 35
si:busm1-160c18.3 HLA-DRB1 ENSDARG00000093706 None Not determined 35
si:busm1-194e12.11 HLA-DQA1 ENSDARG00000055441 None Not determined 27
si:busm1-194e12.12 HLA-DRB1 ENSDARG00000055447 None Not determined 35
si:busm1-228j01.3 HLA-DQA1 ENSDARG00000086294 3 Not determined 27
si:busm1-228j01.4 HLA-DRB1 ENSDARG00000088872 1 Not determined 35
si:busm1-228j01.5 HLA-DQA1 ENSDARG00000079593 1 Not determined 27
si:busm1-228j01.6 HLA-DRB1 ENSDARG00000041705 None Not determined 35
si:ch1073-403i13.1 HLA-DQA1 ENSDARG00000001832 None Not determined 27
si:ch73-211l2.3 HLA-DQA1 ENSDARG00000075932 1 Not determined 27
si:dkey-222b8.1 SMAD4 ENSDARG00000045094 1 Not determined 1
si:dkeyp-2h4.2 HLA-DQA1 ENSDARG00000031745 None Not determined 27
si:zfos-2070c2.1 HLA-DQA1 ENSDARG00000070206 None Not determined 27
si:zfos-2070c2.3 HLA-DRB1 ENSDARG00000076307 None Not determined 35
si:zfos-367g9.1 HLA-DQA1 ENSDARG00000074816 1 Not determined 27
smad4 SMAD4 ENSDARG00000023527 None Not determined 1
spsb1 SPSB1 ENSDARG00000056515 None Not determined 3
spsb4b SPSB1 ENSDARG00000040538 2 Not determined 3
taf1 TAF1L ENSDARG00000035330 6 Normal 1
wu:fd58b11 HLA-DRB1 ENSDARG00000054921 None Not determined 35
zgc:123107 HLA-DQA1 ENSDARG00000020286 None Not determined 27
zgc:123181 PCDH8 ENSDARG00000095430 1 Not determined 2
zgc:153067 HLA-DRB1 ENSDARG00000056330 1 Not determined 35

The following reported genes could not be linked automatically to a zebrafish gene:

  • TET2
  • TMEM215
* quick link - http://q.sanger.ac.uk/2dw3kmx0