GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
adora2b ADORA2B ENSDARG00000002533 1 Not determined 1
akap9 CEP110 ENSDARG00000079610 3 Not determined 1
arhgap10 ARHGAP10 ENSDARG00000078326 3 Not determined 2
auts2 AUTS2 ENSDARG00000056427 2 Not determined 5
B8A5G1_DANRE ODZ2 ENSDARG00000037122 15 Normal 4
bcas3 BCAS3 ENSDARG00000054893 2 Normal 8
bcas3 BCAS3 ENSDARG00000090764 None Not determined 8
bcdo2l BCO2 ENSDARG00000027620 None Not determined 2
bco2a BCO2 ENSDARG00000055722 3 Not determined 2
bco2b BCO2 ENSDARG00000041715 None Not determined 2
bltk BLK ENSDARG00000007783 2 Not determined 11
bmp4 BMP4 ENSDARG00000019995 None Not determined 4
cdc42 CDC42 ENSDARG00000044573 1 Not determined 1
cdc42l CDC42 ENSDARG00000040158 None Not determined 1
cdc42l2 CDC42 ENSDARG00000057869 None Not determined 1
col1a2 COL1A2 ENSDARG00000020007 2 Not determined 4
col28a1 COL28A1 ENSDARG00000077084 2 Not determined 1
COL28A1 (2 of 2) COL28A1 ENSDARG00000087087 None Not determined 1
col4a4 COL4A4 ENSDARG00000002831 6 Not determined 1
dab1a DAB1 ENSDARG00000059939 2 Not determined 3
dab1b DAB1 ENSDARG00000003290 2 Not determined 3
DAGLA DAGLA ENSDARG00000062956 1 Not determined 2
DIP2C (1 of 2) DIP2C ENSDARG00000088250 None Not determined 3
dync1i1 DYNC1I1 ENSDARG00000060948 None Not determined 2
elac1 ELAC1 ENSDARG00000045095 None Not determined 1
fkbp6 FKBP6 ENSDARG00000030133 None Not determined 1
FKBP6 (2 of 2) FKBP6 ENSDARG00000090100 None Not determined 1
GRIN2B (2 of 2) GRIN2B ENSDARG00000079348 1 Not determined 6
grin2bb GRIN2B ENSDARG00000030376 5 Not determined 6
irak4 IRAK4 ENSDARG00000010657 None Not determined 1
kcnd2 KCND2 ENSDARG00000032799 3 Not determined 2
kcnd3 KCND3 ENSDARG00000056101 1 Not determined 3
LOC100003922 P2RY1 ENSDARG00000076845 None Not determined 1
LOC100150849 AUTS2 ENSDARG00000020946 1 Not determined 5
LOC100330946 MEX3C ENSDARG00000068971 None Not determined 2
LOC100332507 CEP110 ENSDARG00000086540 1 Not determined 1
LOC556647 GFRA3 ENSDARG00000087704 None Not determined 1
LOC557328 TIMELESS ENSDARG00000078497 3 Not determined 1
LOC559873 RFT1 ENSDARG00000060398 None Not determined 2
LOC562072 LTBP1 ENSDARG00000056922 8 Not determined 4
LOC564761 ITIH3 ENSDARG00000055053 5 Not determined 4
LOC565651 GFRA3 ENSDARG00000074582 3 Not determined 1
LOC567172 ATP10A ENSDARG00000061039 6 Not determined 2
LOC570872 TMEM173 ENSDARG00000091058 None Not determined 1
LOC798868 DYNC1I1 ENSDARG00000022487 None Not determined 2
lpp LPP ENSDARG00000023578 1 Not determined 10
mnat1 MNAT1 ENSDARG00000002077 2 Not determined 1
mthfd2l MTHFD2L ENSDARG00000054199 None Not determined 1
ndufb6 NDUFB6 ENSDARG00000037259 None Not determined 1
NGFR (2 of 3) NGFR ENSDARG00000089223 None Not determined 1
NGFR (1 of 3) NGFR ENSDARG00000088708 None Not determined 1
ngfrl NGFR ENSDARG00000032984 None Not determined 1
NP_001020335.1 ITIH4 ENSDARG00000024928 None Not determined 4
NP_958903.1 RAB14 ENSDARG00000045261 None Not determined 1
pde4d PDE4D ENSDARG00000032761 5 Not determined 7
phex PHEX ENSDARG00000062363 1 Not determined 3
ppp3r1a WDR92 ENSDARG00000092659 None Not determined 1
ppp3r1b WDR92 ENSDARG00000069360 None Not determined 1
prr16 PRR16 ENSDARG00000075358 None Not determined 1
pus7l PUS7L ENSDARG00000069780 None Not determined 1
PUS7L (1 of 2) PUS7L ENSDARG00000090957 None Not determined 1
rab14 RAB14 ENSDARG00000074246 None Not determined 1
rab14l RAB14 ENSDARG00000035188 None Not determined 1
rab6ba RAB6B ENSDARG00000034522 4 Not determined 1
rab6bb RAB6B ENSDARG00000031343 4 Not determined 1
sgk1 SGK1 ENSDARG00000025522 2 Not determined 2
si:ch211-12m10.1 ODZ2 ENSDARG00000011171 9 Not determined 4
si:ch211-145b13.4 TOPORS ENSDARG00000037260 6 Not determined 1
si:ch211-166i24.1 ODZ2 ENSDARG00000090676 None Not determined 4
si:ch211-195b13.1 SGK1 ENSDARG00000016623 None Not determined 2
si:ch211-1c4.1 ODZ1 ENSDARG00000003403 10 Not determined 1
si:ch211-215c3.2 ZNF827 ENSDARG00000076171 6 Not determined 4
si:ch211-220f16.2 CEP110 ENSDARG00000007976 2 Not determined 1
si:ch211-273a21.1 CNTN5 ENSDARG00000013647 2 2 normal 6
si:ch211-48m9.1 SLC4A5 ENSDARG00000002771 2 Normal 1
si:ch211-66i11.1 DAPK1 ENSDARG00000060093 1 Not determined 2
si:dkey-161j23.4 DNAH3 ENSDARG00000068468 5 Not determined 1
si:dkey-181h23.2 DIP2C ENSDARG00000062154 4 Not determined 3
si:dkey-206f10.5 ADORA2B ENSDARG00000088165 None Not determined 1
si:dkey-225n3.4 PTCHD1 ENSDARG00000018066 3 Not determined 1
si:dkey-240h12.4 DAPK1 ENSDARG00000034210 5 Not determined 2
si:dkey-25e12.6 MTHFD2L ENSDARG00000091891 3 Not determined 1
si:dkey-7l6.7 DIP2C ENSDARG00000025513 4 Not determined 3
slc15a1a SLC15A1 ENSDARG00000077192 2 Normal 1
slc15a1b SLC15A1 ENSDARG00000044528 2 Not determined 1
slc4a5 SLC4A5 ENSDARG00000005966 6 Not determined 1
spock3 SPOCK3 ENSDARG00000070266 2 Not determined 2
supv3l1 SUPV3L1 ENSDARG00000077728 None Not determined 1
tmem110 TMEM110 ENSDARG00000013694 None Not determined 2
tomm20b TOMM20 ENSDARG00000044636 None Not determined 3
TOPORS (2 of 2) TOPORS ENSDARG00000039784 1 Not determined 1
vps26a VPS26A ENSDARG00000056549 None Not determined 2
wdr92 WDR92 ENSDARG00000037334 1 Not determined 1
zgc:110377 ITIH3 ENSDARG00000055036 1 Not determined 4
zgc:154065 SGK1 ENSDARG00000006598 None Not determined 2
zgc:154074 ATP8A1 ENSDARG00000063001 None Not determined 1
zgc:171814 GFRA3 ENSDARG00000056651 None Not determined 1
zgc:172136 FRMD1 ENSDARG00000078741 None Not determined 1
zgc:193699 TRIM50 ENSDARG00000057550 2 Not determined 1
zgc:55318 CNTN5 ENSDARG00000021584 4 Not determined 6
zgc:55886 UBE2D2 ENSDARG00000043484 2 Normal 1
zgc:56340 UBE2D2 ENSDARG00000038473 None Not determined 1
zgc:56368 TRIM50 ENSDARG00000056678 1 Not determined 1
zgc:63637 RAB6B ENSDARG00000029885 1 Not determined 1

The following reported genes could not be linked automatically to a zebrafish gene:

  • ATP5GP2
  • C2orf83
  • C6orf190
  • CAMKMT
  • CYMP
  • DCHS2
  • ECSM2
  • EPGN
  • FLJ44385
  • GAPDHL19
  • hCG_1820717
  • LOC100128151
  • LOC100128265
  • LOC100129027
  • LOC100129594
  • LOC100129725
  • LOC100129730
  • LOC100131236
  • LOC100131805
  • LOC100132631
  • LOC152118
  • LOC341604
  • LOC344332
  • LOC389936
  • LOC392008
  • LOC441996
  • LOC728241
  • LOC728727
  • LOC729968
  • MAMLD1
  • MDS1
  • NLRP13
  • NLRP8
  • OR2H1
  • SLC6A20
  • XKR4
* quick link - http://q.sanger.ac.uk/57ssczgv