GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association study of intelligence: additive effects of novel brain expressed genes.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
aox1 AOX1 ENSDARG00000020054 4 Not determined 1
aox3 AOX1 ENSDARG00000071475 7 Normal 1
col1a2 COL1A2 ENSDARG00000020007 4 Not determined 4
gypc GYPC ENSDARG00000041546 None Not determined 1
kif11 KIF16B ENSDARG00000010948 3 Not determined 2
LOC100331925 KIF16B ENSDARG00000017162 None Not determined 2
LOC799320 ZNF365 ENSDARG00000087985 1 Not determined 11
pax5 PAX5 ENSDARG00000037383 2 Not determined 2
pisd PISD ENSDARG00000052462 None Not determined 1
prmt6 PRMT6 ENSDARG00000069706 1 Not determined 3
rxraa RXRA ENSDARG00000057737 None Not determined 4
rxrab RXRA ENSDARG00000035127 3 Not determined 4
si:ch211-243k12.1 LUZP2 ENSDARG00000068247 1 Not determined 5
si:ch211-247h9.1 CNTN4 ENSDARG00000062880 2 Not determined 6
si:ch211-46o5.1 CSMD2 ENSDARG00000001559 12 Not determined 5
si:dkey-106l3.5 DEPDC5 ENSDARG00000078105 5 Normal 2
si:dkey-210m15.4 KIF16B ENSDARG00000074158 3 Not determined 2
TUSC3 (2 of 2) TUSC3 ENSDARG00000092570 None Not determined 2
TUSC3 (1 of 2) TUSC3 ENSDARG00000091571 None Not determined 2
ucn3l UCN3 ENSDARG00000087241 None Not determined 1
zgc:153573 CNTN4 ENSDARG00000019405 None Not determined 6

The following reported genes could not be linked automatically to a zebrafish gene:

  • C18orf62
  • CYCSP14
  • ELSPBP1
  • ELSPBP1
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