GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
ablim1a ABLIM1 ENSDARG00000060149 2 Not determined 2
ablim1b ABLIM1 ENSDARG00000045064 1 Not determined 2
acta1b ACTC1 ENSDARG00000055618 1 Not determined 2
actc1b ACTC1 ENSDARG00000037840 1 Not determined 2
ank2 ANK2 ENSDARG00000043313 2 Not determined 1
anp32a ANP32D ENSDARG00000006487 None Not determined 1
anxa13 ANXA13 ENSDARG00000013976 1 Not determined 2
BAIAP2L1 (3 of 3) BAIAP2L1 ENSDARG00000089772 None Not determined 3
baiap2l1a BAIAP2L1 ENSDARG00000029305 2 Normal 3
baiap2l1b BAIAP2L1 ENSDARG00000031119 1 Not determined 3
CD180 (3 of 3) CD180 ENSDARG00000093750 None Not determined 1
CD180 (1 of 3) CD180 ENSDARG00000044415 None Not determined 1
CHL1 (1 of 2) CHL1 ENSDARG00000076233 3 Not determined 7
chl1a CHL1 ENSDARG00000077881 4 Not determined 7
clvs2 CLVS2 ENSDARG00000053122 None Not determined 1
D3HU68_DANRE PTPRU ENSDARG00000059949 2 Not determined 3
DNAH5 DNAH5 ENSDARG00000087373 8 Not determined 5
EPHA10 (2 of 2) EPHA10 ENSDARG00000086787 1 Not determined 1
hm:zewp0073 ACTC1 ENSDARG00000042535 None Not determined 2
hm:zewp0073 ACTC1 ENSDARG00000076126 None Not determined 2
inhbaa INHBA ENSDARG00000012671 None Not determined 3
inhbab INHBA ENSDARG00000024759 2 Normal 3
INSC (2 of 2) INSC ENSDARG00000090459 None Not determined 2
INSC (1 of 2) INSC ENSDARG00000091425 None Not determined 2
KIF13A KIF13A ENSDARG00000069594 2 Not determined 2
LOC565873 CEP152 ENSDARG00000075725 2 Not determined 2
LOC568926 ANK2 ENSDARG00000009026 4 Not determined 1
LOC572450 EPHA10 ENSDARG00000075321 None Not determined 1
nr2f1b NR2F2 ENSDARG00000017168 None Not determined 3
nr2f2 NR2F2 ENSDARG00000040926 1 Not determined 3
nr2f5 NR2F2 ENSDARG00000033172 1 Not determined 3
plcl1 PLCL1 ENSDARG00000067676 2 Not determined 7
PTPRU_DANRE PTPRU ENSDARG00000078090 1 Not determined 3
si:ch211-176d9.3 C18orf34 ENSDARG00000090429 None Not determined 1
si:ch211-205h19.1 ACOXL ENSDARG00000020149 2 Not determined 6
si:ch211-223p9.1 MN1 ENSDARG00000079248 None Not determined 1
si:ch211-247h9.1 CNTN6 ENSDARG00000062880 3 Not determined 3
si:ch73-289a15.4 DNAH12 ENSDARG00000059987 6 Not determined 1
si:dkey-153p21.2 PTPRU ENSDARG00000092638 None Not determined 3
si:dkey-17k14.1 CD180 ENSDARG00000067536 None Not determined 1
si:dkey-217f16.6 TNRC6B ENSDARG00000076389 1 Not determined 5
si:dkey-46g23.1 TNRC6B ENSDARG00000079723 1 Not determined 5
si:dkey-88p24.11 C9orf123 ENSDARG00000092787 None Not determined 1
si:dkeyp-2c8.2 TMTC2 ENSDARG00000035273 1 Not determined 3
si:dkeyp-7a3.1 C18orf34 ENSDARG00000093709 None Not determined 1
syk SYK ENSDARG00000008186 3 Not determined 4
tmtc2 TMTC2 ENSDARG00000045753 2 Not determined 3
tnc TNC ENSDARG00000021948 7 2 normal 2
TNRC6B (1 of 3) TNRC6B ENSDARG00000074161 4 Not determined 5
unc5a BAI3 ENSDARG00000074543 1 Not determined 4
upf2 UPF2 ENSDARG00000074658 2 Not determined 1
VGLL3 VGLL3 ENSDARG00000038305 1 Not determined 4
wu:fe16b04 MN1 ENSDARG00000076529 3 Not determined 1
zgc:112421 ANXA13 ENSDARG00000013613 None Not determined 2
zgc:153452 CWC22 ENSDARG00000014008 6 Not determined 1
zgc:153573 CNTN6 ENSDARG00000019405 1 Not determined 3
zgc:154067 TSEN2 ENSDARG00000091851 None Not determined 1
zgc:158689 BAIAP2L1 ENSDARG00000017785 None Not determined 3
zgc:163001 BAI3 ENSDARG00000059832 3 Not determined 4
zgc:193742 C9orf123 ENSDARG00000092387 None Not determined 1
zgc:77396 SNX16 ENSDARG00000046072 None Not determined 3
zgc:86709 ACTC1 ENSDARG00000057911 1 Not determined 2
zgc:86725 ACTC1 ENSDARG00000079111 1 Not determined 2

The following reported genes could not be linked automatically to a zebrafish gene:

  • ACTBL2
  • AMIGO2
  • C16orf78
  • C7orf66
  • CD200R1L
  • EVC
  • LOC285830
  • LOC63930
  • MIR4319
  • MIR622
  • MIR656
  • NCRNA00284
  • PKIA
  • RNASE9
  • SPATA16
  • ZNF280B
* quick link - http://q.sanger.ac.uk/6gxl41v6