GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association study of Alzheimer's disease with psychotic symptoms.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
bin1 BIN1 ENSDARG00000058820 1 Not determined 6
DIP2C (1 of 2) DIP2C ENSDARG00000088250 None Not determined 3
im:7159195 VSNL1 ENSDARG00000044053 None Not determined 1
LOC100000702 RIMBP2 ENSDARG00000090126 None Not determined 1
mpp7 MPP7 ENSDARG00000008366 None Not determined 4
MPP7 (3 of 3) MPP7 ENSDARG00000025168 2 Not determined 4
MPP7 (2 of 3) MPP7 ENSDARG00000041883 None Not determined 4
NP_001107902.1 SLC2A9 ENSDARG00000063288 3 1 phenotype 14
rimbp2 RIMBP2 ENSDARG00000001154 4 Not determined 1
si:ch211-147g15.1 RIMBP2 ENSDARG00000093752 1 Not determined 1
si:ch73-287m6.1 RIMBP2 ENSDARG00000088977 None Not determined 1
si:dkey-181h23.2 DIP2C ENSDARG00000062154 4 Not determined 3
si:dkey-1d7.1 RIMBP2 ENSDARG00000074614 1 Not determined 1
si:dkey-30j22.11 VSNL1 ENSDARG00000023228 1 Not determined 1
si:dkey-7l6.7 DIP2C ENSDARG00000025513 4 Not determined 3
si:rp71-68g1.4 BIN1 ENSDARG00000042114 4 Not determined 6
slc2a11b SLC2A9 ENSDARG00000093395 2 1 phenotype 14
slc2a15a SLC2A9 ENSDARG00000029894 None Not determined 14
slc2a15b SLC2A9 ENSDARG00000053269 1 Not determined 14
stk11 STK11 ENSDARG00000046074 3 Not determined 1

The following reported genes could not be linked automatically to a zebrafish gene:

  • AC008541.1
  • AC079250.1
  • AC110611.1
  • AP003097.1
  • RP11-242G20.2
  • RP11-291J9.2
  • RP11-341A22.2
  • RP11-572M11.4
  • ZNF320
* quick link - http://q.sanger.ac.uk/3vwkm1ef