GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
ACAN (2 of 2) ACAN ENSDARG00000045799 1 Not determined 3
acana ACAN ENSDARG00000035891 1 Not determined 3
ADAMTSL3 ADAMTSL3 ENSDARG00000027903 6 Not determined 8
antxr1 ANTXR1 ENSDARG00000063612 None Not determined 1
arsh ARSE ENSDARG00000002299 None Not determined 2
atf7a ATF7 ENSDARG00000011298 1 Not determined 2
atf7b ATF7 ENSDARG00000055481 None Not determined 2
dclk1 DCLK1 ENSDARG00000018856 1 Not determined 4
enpp2 ENPP2 ENSDARG00000011257 1 Not determined 1
ENPP2 (1 of 2) ENPP2 ENSDARG00000075384 None Not determined 1
fbn2a FBN2 ENSDARG00000051896 7 Not determined 3
hmga1 HMGA1 ENSDARG00000028335 1 Not determined 9
hmga2 HMGA2 ENSDARG00000069912 None Not determined 18
LOC100005596 CCDC88A ENSDARG00000090986 None Not determined 1
LOC100329473 CCDC88A ENSDARG00000078440 3 Not determined 1
LOC100334833 HMGA2 ENSDARG00000091038 None Not determined 18
LOC793153 ANTXR1 ENSDARG00000025672 1 Not determined 1
map3k3 MAP3K3 ENSDARG00000060348 1 Not determined 3
ncana ACAN ENSDARG00000067820 1 Not determined 3
ncanb ACAN ENSDARG00000005783 1 Not determined 3
pparda PPARD ENSDARG00000044525 1 Not determined 3
ppardb PPARD ENSDARG00000009473 1 Not determined 3
si:ch211-134j6.4 ANTXR1 ENSDARG00000060845 1 Not determined 1
si:ch211-148j1.1 TNS1 ENSDARG00000020845 6 Not determined 4
si:ch211-167h3.1 DYM ENSDARG00000042555 5 Not determined 4
si:ch211-250g4.3 CCDC88A ENSDARG00000092945 2 Not determined 1
si:ch73-160p19.2 ZBTB38 ENSDARG00000077426 None Not determined 12
si:ch73-86n6.2 LYRM4 ENSDARG00000078352 None Not determined 1
si:dkey-261l11.3 ANTXR1 ENSDARG00000074075 1 Not determined 1
sulf1 SULF1 ENSDARG00000038428 4 Not determined 3
TNS1 (2 of 2) TNS1 ENSDARG00000078842 1 Not determined 4
TTLL5 TTLL5 ENSDARG00000089650 3 Not determined 1
zgc:153948 HMGA1 ENSDARG00000070951 2 Not determined 9
zgc:171516 MAP3K3 ENSDARG00000074219 1 Not determined 3
zgc:171845 DCLK1 ENSDARG00000074976 None Not determined 4
zgc:175202 CCDC88A ENSDARG00000076189 4 Not determined 1

The following reported genes could not be linked automatically to a zebrafish gene:

  • C19orf35
  • LCORL
  • ZFAT1
* quick link - http://q.sanger.ac.uk/dmn0l55n