GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association study identifies five new schizophrenia loci.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
cacna1c CACNA1C ENSDARG00000008398 4 1 phenotype 7
CACNA1C CACNA1C ENSDARG00000037904 None Not determined 7
cnnm2a CNNM2 ENSDARG00000061195 2 Not determined 9
cnnm2b CNNM2 ENSDARG00000078733 2 Not determined 9
CSMD1 CSMD1 ENSDARG00000058353 1 Not determined 12
E2J8V4_DANRE TCF4 ENSDARG00000087652 None Not determined 9
itm1 STT3A ENSDARG00000053832 4 Not determined 2
LOC564761 ITIH3 ENSDARG00000055053 5 Not determined 4
MMP16 (3 of 3) MMP16 ENSDARG00000025111 None Not determined 4
mmp16a MMP16 ENSDARG00000088118 None Not determined 4
mmp16b MMP16 ENSDARG00000058876 2 Not determined 4
NP_001020335.1 ITIH4 ENSDARG00000024928 None Not determined 4
nt5c2a NT5C2 ENSDARG00000039399 3 Not determined 9
nt5c2b NT5C2 ENSDARG00000058231 2 Not determined 9
TCF4 (1 of 2) TCF4 ENSDARG00000075546 1 Not determined 9
zgc:110377 ITIH3 ENSDARG00000055036 1 Not determined 4

The following reported genes could not be linked automatically to a zebrafish gene:

  • CCDC68
  • MIR137
  • PCGEM1
  • TRIM26
* quick link - http://q.sanger.ac.uk/a7931mdi