GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
bmp7a BMP7 ENSDARG00000018260 2 1 phenotype 2
bmp7b BMP7 ENSDARG00000063230 1 Not determined 2
cmyb MYB ENSDARG00000053666 None Not determined 12
erg ERG ENSDARG00000077304 1 Not determined 3
gata2a GATA2 ENSDARG00000059327 2 Not determined 2
gata2b GATA2 ENSDARG00000009094 1 Not determined 2
hbs1l HBS1L ENSDARG00000036778 1 Not determined 11
lmo4a LMO4 ENSDARG00000013853 1 Normal 2
lmo4b LMO4 ENSDARG00000054749 1 Not determined 2
LOC100331333 ITGA4 ENSDARG00000061186 1 Not determined 3
LOC569515 CDK6 ENSDARG00000030163 1 Not determined 8
psmd3 PSMD3 ENSDARG00000018124 1 Not determined 2
si:ch211-205h19.1 ACOXL ENSDARG00000020149 2 Not determined 6
si:ch211-234f14.1 CDK6 ENSDARG00000070228 None Not determined 8
si:dkey-90l8.3 LMO4 ENSDARG00000052657 None Not determined 2
si:dkey-90l8.3 LMO4 ENSDARG00000093434 None Not determined 2
slc45a3 SLC45A3 ENSDARG00000075975 3 Not determined 3
slc9a2 SLC9A4 ENSDARG00000058780 1 Not determined 2
STXBP6 (1 of 2) STXBP6 ENSDARG00000088862 1 Not determined 3
stxbp6l STXBP6 ENSDARG00000028354 1 Not determined 3
tas1r1 TAS1R1 ENSDARG00000056739 3 Not determined 1
zgc:56429 NAALAD2 ENSDARG00000021383 1 Not determined 1
zgc:56628 LMO4 ENSDARG00000015849 1 Not determined 2
zgc:77158 SLC45A3 ENSDARG00000013784 2 Not determined 3

The following reported genes could not be linked automatically to a zebrafish gene:

  • CSF3
  • CXCL2
  • MHC
  • MHC
  • MLZE
  • NUKS1
* quick link - http://q.sanger.ac.uk/c347pz58